PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_48.162
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family TALE
Protein Properties Length: 335aa    MW: 37855.2 Da    PI: 5.0772
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_48.162genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.13.5e-092602932255
                                   SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
                      Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                                    +yp+++e+ +L+k +gL+++q+ +WF N+R ++
  evm.model.supercontig_48.162 260 WPYPTEDEKLKLSKTTGLDQKQINNWFINQRKRH 293
                                   58*****************************885 PP
2ELK35.91.6e-12213234122
                           ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                                   ++K +LlrKYsgyL+sL++EF+
  evm.model.supercontig_48.162 213 DIKGMLLRKYSGYLSSLRKEFL 234
                                   58*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.5E-1860104IPR005540KNOX1
PfamPF037907.0E-1962102IPR005540KNOX1
SMARTSM012565.9E-25113164IPR005541KNOX2
PfamPF037911.2E-23117163IPR005541KNOX2
PfamPF037891.7E-9213234IPR005539ELK domain
PROSITE profilePS5121310.563213233IPR005539ELK domain
SMARTSM011882.8E-6213234IPR005539ELK domain
PROSITE profilePS5007112.519233296IPR001356Homeobox domain
SMARTSM003891.2E-12235300IPR001356Homeobox domain
SuperFamilySSF466893.21E-19235305IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.0E-27238299IPR009057Homeodomain-like
CDDcd000864.21E-12245297No hitNo description
PfamPF059208.8E-17253292IPR008422Homeobox KN domain
PROSITE patternPS000270271294IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0010094Biological Processspecification of carpel identity
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MEELYRVDMG TSGRMVRSGE INYGASSSDR QCLHIRSSAE EDSMLQFQAA HVHGGSRMSD  60
LVKTQIATHP RYPHLLSAYI ECQKVGAPPE MASVLEEINR DSQYHYPISS SCSNIELGAD  120
PELDQFMESY CEVLHRYKEE LAKPFDEATS FLSSIESELS NLCQGLTLPK SLDYRSDEGG  180
GSSEEEQSVG EIELGAADQS YQESSDKLLN DQDIKGMLLR KYSGYLSSLR KEFLKKRKKG  240
KLPKDARTTL LDWWNNHYRW PYPTEDEKLK LSKTTGLDQK QINNWFINQR KRHWKPSEDM  300
RYALMEGVNT GTGMAGALPI YFDTEGAGEN GNQS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1228237LRKEFLKKRK
2234238KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269|PubMed:10488233}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_48.162
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021898697.10.0homeobox protein knotted-1-like 1
SwissprotQ9FP291e-100KNOS1_ORYSJ; Homeobox protein knotted-1-like 1
TrEMBLA0A2P5VVM51e-132A0A2P5VVM5_GOSBA; Uncharacterized protein
STRINGevm.model.supercontig_48.1620.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8352785
Representative plantOGRP16717148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.15e-79KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Park SH, et al.
    A Ds-insertion mutant of OSH6 (Oryza sativa Homeobox 6) exhibits outgrowth of vestigial leaf-like structures, bracts, in rice.
    Planta, 2007. 227(1): p. 1-12
    [PMID:17624547]