PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_48.112
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family C2H2
Protein Properties Length: 306aa    MW: 33207 Da    PI: 9.6794
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_48.112genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.5e-05132154123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   ++C++C+k Fs++  L  H++ H
  evm.model.supercontig_48.112 132 FSCSYCKKDFSTSQALGGHQNAH 154
                                   89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.36E-6129159No hitNo description
Gene3DG3DSA:3.30.160.601.3E-4130158IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139123.6E-6131156IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.843132159IPR007087Zinc finger, C2H2
PROSITE patternPS000280134154IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MEASSGKQSI SESSSISAAC QENSGREKVG AGAATVVKPA SLKEKEVVFI DLSRDNDRDD  60
DRPSKVKPSS DFNLFSKEKM LSLGGSSGGS EIELKLSTIN AYNQALINPF SAPTSLVQTN  120
PRSAAKQKSR VFSCSYCKKD FSTSQALGGH QNAHKQERAL AKRRKETGFG HSPFPFYSPF  180
PNSQMPFYSS YNRPSYVSPI GLNSSIQKPS YPWTPSGFSY CVGHGGVSIT STTSQFPTPN  240
NQPTRKEPYP TSSEKKIGDG LSISTPTPKE RPTVTLNFLQ PLPEKKTRKD DDENDNSGLD  300
LSLKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_48.112
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021898890.10.0zinc finger protein 3-like
STRINGevm.model.supercontig_48.1120.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87382636
Representative plantOGRP8215137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01860.11e-18C2H2 family protein