PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_46.14
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family YABBY
Protein Properties Length: 219aa    MW: 24265.6 Da    PI: 8.7711
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_46.14genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY204.63.8e-6361924170
                        YABBY   4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee............... 70 
                                  + ++eq+Cy+ CnfCn +lavsvP +slf +vtvrCGhCt+l svn+a a q l+ ++  ++++                  
  evm.model.supercontig_46.14   6 DVAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDV-QRAVGFCghsctrasgpcpdps 86 
                                  5689**********************************************999998884.5544433457889999999997 PP

                        YABBY  71 .....lleelkveeenlksnvekeesastsvssekl..senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnP 145
                                         +++  +  + + + ++e  +s++ s +k+   +  ++++++   v+rPPekrqrvPsayn+fikeeiqrika+nP
  evm.model.supercontig_46.14  87 qqaraSSANKAPKYASPEPYRIHEWGSSSKCS-NKMsmRSPPNHKAAEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNP 167
                                  65543233333333333334444433333333.3441244456666666779****************************** PP

                        YABBY 146 dishreafsaaaknWahfPkihfgl 170
                                  dishreafs+aaknWahfP+ihfgl
  evm.model.supercontig_46.14 168 DISHREAFSTAAKNWAHFPHIHFGL 192
                                  ***********************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.2E-678192IPR006780YABBY protein
SuperFamilySSF470956.02E-8135185IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.101.8E-4140186IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:1902183Biological Processregulation of shoot apical meristem development
GO:2000024Biological Processregulation of leaf development
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MSSCIDVAPE QLCYIPCNFC NIVLAVSVPC SSLFDIVTVR CGHCTNLWSV NMAAAFQSLS  60
WQDVQRAVGF CGHSCTRASG PCPDPSQQAR ASSANKAPKY ASPEPYRIHE WGSSSKCSNK  120
MSMRSPPNHK AAEERVVNRP PEKRQRVPSA YNQFIKEEIQ RIKANNPDIS HREAFSTAAK  180
NWAHFPHIHF GLMLESNNQA KADGTHDKHL MQRAALLK*
Functional Description ? help Back to Top
Source Description
UniProtPromotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_46.14
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0902162e-74BT090216.1 Soybean clone JCVI-FLGm-3N14 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021899266.11e-163axial regulator YABBY 5-like isoform X1
SwissprotQ8GW462e-80YAB5_ARATH; Axial regulator YABBY 5
TrEMBLA0A1Q3CQH71e-107A0A1Q3CQH7_CEPFO; YABBY domain-containing protein
STRINGevm.model.supercontig_46.141e-163(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55382649
Representative plantOGRP22101236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.28e-83YABBY family protein
Publications ? help Back to Top
  1. Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC
    The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity.
    Plant Cell, 2015. 27(12): p. 3321-35
    [PMID:26589551]