PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_44.98
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family C2H2
Protein Properties Length: 190aa    MW: 21264 Da    PI: 5.9354
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_44.98genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.000153355123
                                 EEETTTTEEESSHHHHHHHHHHT CS
                      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                 y+C+ C++ F++   L  H++ H
  evm.model.supercontig_44.98 33 YECTFCKRGFTNAQALGGHMNIH 55
                                 99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.52E-73059No hitNo description
Gene3DG3DSA:3.30.160.606.0E-53159IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.4683360IPR007087Zinc finger, C2H2
SMARTSM003550.00973355IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803555IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0051973Biological Processpositive regulation of telomerase activity
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MDSGREESPD YSSEGNDNLK EEMAGSPATR RSYECTFCKR GFTNAQALGG HMNIHRKDRA  60
KAKQTTANSS SLISTRRSTD DHTNPSCTSF STEYATKNYP PVLEGQRNYN MYFQPPFSSP  120
NHPHVENTDR KFLGAQTSND SNSSLNEQRW GSNLSLQLGS NYQPYNDQVA RGIMQEDDLD  180
LELRLGHDP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_44.98
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021899487.11e-141transcriptional regulator SUPERMAN-like
TrEMBLA0A061ENL36e-51A0A061ENL3_THECC; C2H2 and C2HC zinc fingers superfamily protein, putative
STRINGevm.model.supercontig_44.981e-140(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91682435
Representative plantOGRP19981133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.11e-15C2H2 family protein