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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
evm.model.supercontig_44.60 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family |
MYB |
Protein Properties |
Length: 223aa MW: 25536.8 Da PI: 6.9242 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
evm.model.supercontig_44.60 | genome | ASGPB | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 54.3 | 3.2e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+eEd++l ++++++G +W++ ++ g+ R++k+c++rw +yl
evm.model.supercontig_44.60 14 KGPWTPEEDQILTNYIRKYGHANWRALPKLAGLLRCGKSCRLRWINYL 61
79******************************99************97 PP
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2 | Myb_DNA-binding | 56.1 | 8.4e-18 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg++T+eE+e ++++++ lG++ W++Ia++++ gRt++++k+ w+++l
evm.model.supercontig_44.60 67 RGNFTPEEEETIINLHQILGNR-WSAIAAKLP-GRTDNEIKNVWHTHL 112
89********************.*********.************986 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 223 aa
Download sequence Send
to blast |
MGRAPCCEKM GLKKGPWTPE EDQILTNYIR KYGHANWRAL PKLAGLLRCG KSCRLRWINY 60 LRPDIKRGNF TPEEEETIIN LHQILGNRWS AIAAKLPGRT DNEIKNVWHT HLKKRLKQKP 120 NTIISQIKNE PSSLTSKSSE TPTSSLPLSP QASSSEITNN MEDIFPEIDQ SFWSDFSEIS 180 NELEQDYSYY GLDSSVSGLD EFWYELFIRA GNGQDQLQQL WS*
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Functional Description ? help
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Source |
Description |
UniProt | Transcription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269|PubMed:24415840}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:24415840}. |
Orthologous Group
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Representative plant | OGRP5 | 17 | 1784 |