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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_43.122 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | MYB_related | ||||||||
Protein Properties | Length: 89aa MW: 10094.5 Da PI: 9.8588 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 64.2 | 2.4e-20 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+++++++G g+W++ ++ g++R++k+c++rw +yl evm.model.supercontig_43.122 14 KGPWTPEEDKKLIEYIEEHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 61 79********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.2E-27 | 7 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.155 | 9 | 65 | IPR017930 | Myb domain |
SMART | SM00717 | 2.1E-16 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-19 | 14 | 61 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 6.12E-25 | 15 | 88 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.39E-12 | 16 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.8E-8 | 65 | 88 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 7.064 | 66 | 88 | IPR017930 | Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 89 aa Download sequence Send to blast |
MGRSPYSDGN GVKKGPWTPE EDKKLIEYIE EHGHGSWRAL PKLAGLNRCG KSCRLRWTNY 60 LRPDIKRGKF SEDEEKTIIN LHSVLGNK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-17 | 14 | 88 | 7 | 80 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_43.122 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by gravity in roots. {ECO:0000269|PubMed:24902892}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021899651.1 | 2e-59 | transcription factor MYB16 | ||||
Swissprot | Q9SBF3 | 1e-51 | MYB92_ARATH; Transcription factor MYB92 | ||||
TrEMBL | A0A0K9RLU6 | 1e-51 | A0A0K9RLU6_SPIOL; Uncharacterized protein | ||||
TrEMBL | A0A2I0AC75 | 9e-52 | A0A2I0AC75_9ASPA; Transcription factor MYB39 | ||||
STRING | evm.model.supercontig_43.122 | 5e-59 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G10280.1 | 5e-54 | myb domain protein 92 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_43.122 |
Publications ? help Back to Top | |||
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