PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_42.122
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family C3H
Protein Properties Length: 837aa    MW: 91524.8 Da    PI: 6.9855
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_42.122genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.12.6e-07163185326
                                   S---SGGGGTS--TTTTT-SS-SS CS
                       zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                                   te C +f++ G C++G++C++ H+
  evm.model.supercontig_42.122 163 TEHCTNFLK-GACRRGASCRYLHD 185
                                   778******.*************5 PP
2zf-CCCH171e-05229248525
                                   --SGGGGTS--TTTTT-SS-S CS
                       zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                                   +C+ffa+ G C+ G  C+F+H
  evm.model.supercontig_42.122 229 PCKFFAA-GNCRNGKYCRFSH 248
                                   7**9999.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.756160187IPR000571Zinc finger, CCCH-type
SMARTSM003564.6E-4160186IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.54E-5161185IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-5163185IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-4163185IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.31224251IPR000571Zinc finger, CCCH-type
SMARTSM003560.0075224250IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-5227249IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.5E-4229253IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 837 aa     Download sequence    Send to blast
MSSSSRRRVS KWDLKEDSQH SPDKVREDDW PGKSDIEANS KPKSELDLRQ LPRDTLLRGR  60
GSGRSDGMND DYIKNLKPTT EWDGSGSYEV GAKVGAGAEA GVGAEAGAGA GAGAGAGAGA  120
GALSVGDQTY EDSWESRNRK SRDSKYSTPN DSREHSVRSG RSTEHCTNFL KGACRRGASC  180
RYLHDGGLDG VVGGPLSEGI RERENDKRGR DASMERGNDH ESRRSHDIPC KFFAAGNCRN  240
GKYCRFSHQG EARVSPERRA HDDRWGRGHI SNDVEKVWNG ATWNGVDKQE APKLSEEKNE  300
KMEISDPRFS SWSAADGLNH SFKDSSVLGD ASVNLKAVNN PEKKAPQWKA RSIDLSTDIP  360
ESKGADKWID DMEMSPEWNY RIQSSNNTEK EEHGDIPQNI QSESLKDDPA PTRERNRNKE  420
ASGWMHDRVA SLEPVVTESS YFRKDLNLGQ GGAIGFSCND KKAIENSMGS LIDLNFSANI  480
VPAQNFDQNS HISSALGYST KAGQNQVAIP IDPSTGLSMK SSENGALFQG NTLTSKPDIG  540
DSNITLINPA NQLTQDIVGS AGLTNLSASL AQLFGNGQQL PQLYAALNPQ NATQVPSFTN  600
SQGLSKPDSS AIINSNQAIA SEKQYDPISD SIEPKKHDMN VSPRGFQLNP IGQENITKGR  660
PEVPPNNLMS TSFVRSSCHN DNKNSCTEEP TRGSHGLKHQ EPGTNSQTPK ADTGMGAEVK  720
NKIREENQIV PGSVENIDGD GRTDETKRSR DNKSIRAFKF ALVEFVKELL KPTWKEGQIS  780
KEAYKNIVKK AVDKVTGTMK DPNIPQTQEK IDQYLSVSKP KLTKLIQAYV EKFQKS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_42.122
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021899887.10.0zinc finger CCCH domain-containing protein 38
RefseqXP_021899888.10.0zinc finger CCCH domain-containing protein 38
RefseqXP_021899889.10.0zinc finger CCCH domain-containing protein 38
RefseqXP_021899890.10.0zinc finger CCCH domain-containing protein 38
STRINGevm.model.supercontig_42.1220.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15764912
Representative plantOGRP1027869
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.14e-19C3H family protein