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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
evm.model.supercontig_41.83 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
|
| Family |
Trihelix |
| Protein Properties |
Length: 394aa MW: 43165.8 Da PI: 9.7591 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| evm.model.supercontig_41.83 | genome | ASGPB | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 70.7 | 2.8e-22 | 77 | 168 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsesss 77
+W+++e+ aLi+a+r+++ +lrrg+lk+++W+ev++++ + ++++qC++k+e+l+kry+++ +++++ s+ ss
evm.model.supercontig_41.83 77 CWSHDETVALIDAYRDKWYTLRRGNLKATHWQEVADAVarrcPAASPPKTAVQCRHKMEKLRKRYRAEIQRARSMpISRFSS 158
7**********************************99966556667799*************************9669**** PP
trihelix 78 tcpyfdqlea 87
++++f++++a
evm.model.supercontig_41.83 159 SWVHFKRMDA 168
********85 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 394 aa
Download sequence Send
to blast |
MSAPPSPTIQ NPTPPPPPPN PSPTPTQSSP PKPQITPPAS TSVPGIVTIA ADGSAVAAAV 60
TTTAAPSTNP RRLPPPCWSH DETVALIDAY RDKWYTLRRG NLKATHWQEV ADAVARRCPA 120
ASPPKTAVQC RHKMEKLRKR YRAEIQRARS MPISRFSSSW VHFKRMDAME KGPSAKPDYN 180
SDSPDEDNDE DEEDDLDQDL YDDMYKNGGG VVNTRSMQRL YNRNGIVGGG GSSSSGGTGF 240
RIRIPTGVSI AQPGPRFYGK IDQKYAGISN SNANSSPNSN PKVGFGAGSN YATKVLRGCE 300
EMGRSGLGGK REREKESDPM TEMVGAIKLL GDGFVRMEQM KMEMAREMEA MRMEMEMKRT 360
EMILESQQRI VEAFAKAFSE KRKKPKRMPS PDS*
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