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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_4.223 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | C3H | ||||||||
Protein Properties | Length: 458aa MW: 49584.3 Da PI: 6.7682 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.9 | 3.5e-08 | 106 | 127 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C+++ + G C yGd C+F H+ evm.model.supercontig_4.223 106 KVCNYWVQ-GKCDYGDECRFLHS 127 68******.*************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 0.74 | 25 | 50 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 9.563 | 25 | 51 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.483 | 102 | 129 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.54E-7 | 103 | 127 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.7E-5 | 104 | 128 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.0E-6 | 106 | 127 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.0E-7 | 106 | 126 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:2.130.10.10 | 2.6E-42 | 127 | 413 | IPR015943 | WD40/YVTN repeat-like-containing domain |
SuperFamily | SSF50978 | 4.88E-43 | 132 | 181 | IPR017986 | WD40-repeat-containing domain |
SMART | SM00320 | 1.9E-5 | 133 | 172 | IPR001680 | WD40 repeat |
Pfam | PF00400 | 3.9E-4 | 136 | 172 | IPR001680 | WD40 repeat |
PROSITE profile | PS50082 | 13.75 | 140 | 181 | IPR001680 | WD40 repeat |
PROSITE profile | PS50294 | 19.986 | 140 | 389 | IPR017986 | WD40-repeat-containing domain |
PRINTS | PR00320 | 7.2E-6 | 159 | 173 | IPR020472 | G-protein beta WD-40 repeat |
PROSITE pattern | PS00678 | 0 | 159 | 173 | IPR019775 | WD40 repeat, conserved site |
SMART | SM00320 | 9.7 | 212 | 249 | IPR001680 | WD40 repeat |
SuperFamily | SSF50978 | 4.88E-43 | 219 | 414 | IPR017986 | WD40-repeat-containing domain |
SMART | SM00320 | 0.0017 | 256 | 293 | IPR001680 | WD40 repeat |
Pfam | PF00400 | 0.0071 | 260 | 293 | IPR001680 | WD40 repeat |
PROSITE profile | PS50082 | 11.745 | 263 | 302 | IPR001680 | WD40 repeat |
PRINTS | PR00320 | 7.2E-6 | 280 | 294 | IPR020472 | G-protein beta WD-40 repeat |
SMART | SM00320 | 0.0016 | 296 | 333 | IPR001680 | WD40 repeat |
Pfam | PF00400 | 0.095 | 298 | 332 | IPR001680 | WD40 repeat |
PRINTS | PR00320 | 7.2E-6 | 320 | 334 | IPR020472 | G-protein beta WD-40 repeat |
SMART | SM00320 | 7.9 | 337 | 380 | IPR001680 | WD40 repeat |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 458 aa Download sequence Send to blast |
MDLDGQGGGK RVFHRLGGQP APAAGTKGKV CFHWRAGKCS RHPCPYLHRE LPPPNPAAAV 60 VNGSAPKRFA DDSGFSGRGH RRSPGFNANN TWGRVGGNRA VRKAEKVCNY WVQGKCDYGD 120 ECRFLHSWSL GDSFSLLTQL EGHKKLVSGI SLPSGSDKLY TGSKDETVRV WDCASGQCMH 180 IINLGGEVGC MISEGPWVFV GMPNFVKAWN IQTSSDQSLS GPAGQVYALV VGNDLLFAGT 240 QDGAILAWRF SVVTNSFEPA ASLTGHSLAV VSLIVGANKL YSGSMDHSIR VWSLETLQCI 300 QTLMEHTSVV MSLLCWDQFL LSCSLDQTIK VWVATESGNL EVTYTHNEEH GLLALCGMHD 360 LEAKPVLLCA CNDNSVRVYD LPSFSEKGKI FAKQEIRAIQ VGPGGLFFTG DGTGLGNAAN 420 FSLREELEVE NVSFEFLALD IQQHQALYYL AVCCSIV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6g6m_A | 4e-21 | 119 | 383 | 8 | 323 | Tako8 |
6g6n_A | 4e-21 | 119 | 383 | 8 | 323 | Tako8 |
6g6n_B | 4e-21 | 119 | 383 | 8 | 323 | Tako8 |
6g6n_C | 4e-21 | 119 | 383 | 8 | 323 | Tako8 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_4.223 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021908885.1 | 0.0 | zinc finger CCCH domain-containing protein 63-like | ||||
Swissprot | Q9FNZ2 | 0.0 | C3H48_ARATH; Zinc finger CCCH domain-containing protein 48 | ||||
TrEMBL | A0A251KR25 | 0.0 | A0A251KR25_MANES; Uncharacterized protein | ||||
STRING | evm.model.supercontig_4.223 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1839 | 28 | 69 |
Representative plant | OGRP1065 | 16 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51980.1 | 0.0 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_4.223 |