PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_4.187
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family M-type_MADS
Protein Properties Length: 98aa    MW: 11432.6 Da    PI: 9.928
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_4.187genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF23.47.8e-081212141
                                 HHHHHHHHHHHT-EEEEEEE- CS
                       SRF-TF 21 lKKAeELSvLCdaevaviifs 41
                                 +KK +EL +LCd++++vii  
  evm.model.supercontig_4.187  1 MKKVSELNTLCDVKACVIINN 21
                                 8*****************964 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF003196.8E-6121IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.06E-9152IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 98 aa     Download sequence    Send to blast
MKKVSELNTL CDVKACVIIN NSYDLQLEVW PSPLRAQRMI ANFKRMFEMK WSKTIVIDEL  60
KKQIKDNRDK NITHIMFQSP IGKLIHQINL IDLNYLG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_4.187
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021898922.12e-34agamous-like MADS-box protein AGL80
TrEMBLA0A315A1175e-28A0A315A117_PRUYE; Agamous-like MADS-box protein AGL80
STRINGevm.model.supercontig_4.1877e-66(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Representative plantOGRP11413173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.18e-19AGAMOUS-like 80