PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_4.179

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

bHLH

Protein Properties

Length: 236aa MW: 26774.5 Da PI: 9.8303

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_4.179	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.1	6.5e-13	87	139	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ h +Er+RR+++ + ++ Lr+llP ++ ++K ++ +Av+YIk+Lq evm.model.supercontig_4.179 87 KKMHHRDIERQRRQEMATLYASLRSLLPLDF--IKGKRAISDHMNEAVNYIKHLQ 139 6899***********************75..*******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	5.5E-13	84	153	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.19E-10	86	143	No hit	No description
PROSITE profile	PS50888	13.598	86	138	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.8E-10	87	139	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.6E-10	87	154	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.9E-4	92	144	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MFPLQQSNEL CFRISSSPHH QHKIPQDLIL SCALTDGMSD MIAVDNNLGK SRRRKVCGMA 60 STKTTERHDL HHPQEFGTDN HESNNKKKMH HRDIERQRRQ EMATLYASLR SLLPLDFIKG 120 KRAISDHMNE AVNYIKHLQK NIKELSVKRN RLKQFDSSTA GSINSNSDSS SSMIVNQSLV 180 GVEIMFSSGF WAKSLRLSRV LHVILEEGLC VRSCTSARAD DKFLHTIQAE LFTTQ*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_4.179

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021908994.1	1e-171	transcription factor bHLH36-like
Swissprot	Q9FLI1	2e-44	BH036_ARATH; Transcription factor bHLH36
TrEMBL	A0A067JQS6	1e-66	A0A067JQS6_JATCU; Uncharacterized protein
TrEMBL	B9I4H5	9e-67	B9I4H5_POPTR; Uncharacterized protein
STRING	evm.model.supercontig_4.179	1e-175	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4479	27	54
Representative plant	OGRP1638	8	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51780.1	2e-40	bHLH family protein

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_4.179