PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_4.112
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family bHLH
Protein Properties Length: 361aa    MW: 40010.1 Da    PI: 7.1865
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_4.112genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.92e-09195242455
                                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                  +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  evm.model.supercontig_4.112 195 SHSLAERVRREKISERMKILQKLVPGC----DKVTGKALMLDEIINYVQSLQ 242
                                  8*************************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.66E-17189258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.71E-11189246No hitNo description
PROSITE profilePS5088815.713191241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.9E-17191256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-6195242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-10197247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MASFPYQLHH PFLLDSLLCL PNTTCSSSPP PPPPSMKLYT NNLMDEDHSS CFSQFDPPQD  60
SMKDTTPVIY DNSCVVLSDN EPSVTKKQST DSSTVVDGDQ VTQNLAPVLD KKRKTRNGST  120
LTSSGHHSKR VEYACTGLWL NQETGREGKS KRQKKCMSNG GEDRKEGKGE KKVADQQPPT  180
GYIHVRARRG QATDSHSLAE RVRREKISER MKILQKLVPG CDKVTGKALM LDEIINYVQS  240
LQNQVEFLSM KLASLNPVFY DFGVDLDAFM VKPERMGCVQ ECSPTQITAF ADATTTNFAP  300
ANNYSLLDAS SPAFFIQQPQ IRPHPQDNGN GLLWDAEEQR QKFLNPSGTG LANSNLCCFH  360
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_4.112
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021909011.10.0transcription factor bHLH137 isoform X1
RefseqXP_021909012.10.0transcription factor bHLH137 isoform X1
RefseqXP_021909013.10.0transcription factor bHLH137 isoform X1
SwissprotQ93W882e-59BH137_ARATH; Transcription factor bHLH137
TrEMBLA0A2C9UIY91e-110A0A2C9UIY9_MANES; Uncharacterized protein
STRINGevm.model.supercontig_4.1120.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87962439
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.26e-55bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]