 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
evm.model.supercontig_39.3 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
|
| Family |
C3H |
| Protein Properties |
Length: 318aa MW: 36349.6 Da PI: 7.4041 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| evm.model.supercontig_39.3 | genome | ASGPB | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 38.4 | 2e-12 | 85 | 111 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
+++++C+f+++tG Ck+G+ C+F+H++
evm.model.supercontig_39.3 85 PGQPECQFYMKTGDCKFGAVCRFHHPR 111
5789*********************96 PP
|
| 2 | zf-CCCH | 40.3 | 5.4e-13 | 132 | 157 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
+++lC f++r+G+Ck+G++CkF H++
evm.model.supercontig_39.3 132 GEPLCIFYSRYGICKFGPSCKFDHPM 157
789*********************95 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SMART | SM00356 | 7.8E-6 | 84 | 111 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 14.596 | 84 | 112 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 6.3E-9 | 86 | 111 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 6.8E-6 | 88 | 114 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 4.5E-5 | 90 | 112 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 1.2E-6 | 130 | 157 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 14.389 | 130 | 158 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 2.1E-10 | 132 | 157 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.11E-5 | 133 | 157 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 4.8E-4 | 135 | 155 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 318 aa
Download sequence Send
to blast |
MTVEEAYQIN REKVERTINA TRNLNDWEIS KYDDLLRILD SLQVKAAADQ AVWKLEKKEV 60
FTLRSYYRFL NARDDHRENV FPERPGQPEC QFYMKTGDCK FGAVCRFHHP RERLIPAPDC 120
VLSPIGLPLR QGEPLCIFYS RYGICKFGPS CKFDHPMGVF TYNFSASTSN DTPVRRLLGS 180
SSGTALNLSS EGLVEAGSTK PRRLSLSETR QMPSGDDNID TDLLNEEFLF QLHDHRIIGN 240
SNLLSLFCHA EKHGPNIGMS RKNWAFQNQR LQIREIIVMD ALQQLLIICA KYLEELIAVS 300
LICMYNGFLP KSWLCNS*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC216470 | 1e-45 | AC216470.1 Populus trichocarpa clone POP037-N11, complete sequence. |
