PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_3890.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | C2H2 | ||||||||
Protein Properties | Length: 239aa MW: 27795.3 Da PI: 8.5644 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.1 | 0.00058 | 170 | 186 | 1 | 17 |
EEETTTTEEESSHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLk 17 y+Cp+Cg++++ + L+ evm.model.supercontig_3890.1 170 YVCPNCGRRYNALDALR 186 9*********9998885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51344 | 34.008 | 16 | 147 | IPR017919 | Transcription factor TFE/TFIIEalpha HTH domain |
SMART | SM00531 | 2.1E-68 | 48 | 218 | IPR002853 | Transcription initiation factor IIE subunit alpha, N-terminal |
Pfam | PF02002 | 5.1E-7 | 50 | 106 | IPR024550 | TFIIEalpha/SarR/Rpc3 HTH domain |
SuperFamily | SSF46785 | 4.42E-6 | 50 | 106 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 4.5E-5 | 52 | 110 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:3.30.40.10 | 6.2E-21 | 156 | 215 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
SuperFamily | SSF57783 | 2.89E-9 | 156 | 211 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006367 | Biological Process | transcription initiation from RNA polymerase II promoter | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MSFNDTPHRS ISLEPFNRLV KLAARAFYDD ITTKGDNQPK TGRSDNRGIA VVVLDALTRR 60 QWVREEDLAK DLKLHSKQLR RTLRFFEEEK LVTRDHRRET ARGAKMYSAA VAATADGQHT 120 GKGDEKVKLH THSYCCLDYA QIYDVVRYRL HRMKKKLKDE LEDKNTVQEY VCPNCGRRYN 180 ALDALRLVSL EDEYFHCENC NGELVAESDK IASQEVGDGD DNARRRRREK LKDMLQNME |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 224 | 229 | RRRREK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_3890.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021906206.1 | 1e-178 | general transcription factor IIE subunit 1-like | ||||
TrEMBL | D7SQ27 | 1e-159 | D7SQ27_VITVI; Uncharacterized protein | ||||
STRING | evm.model.supercontig_3890.1 | 1e-178 | (Carica papaya) |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_3890.1 |