PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

evm.model.supercontig_38.34

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

bZIP

Protein Properties

Length: 288aa MW: 31894.8 Da PI: 7.8441

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_38.34	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	25.8	2.3e-08	233	279	17	63
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 17 ArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 A+rsR RK+++i+eLe+ v++L+ae ++ ele l+++ l +e+ evm.model.supercontig_38.34 233 AQRSRVRKLQYIAELERNVQALQAEGSEVSAELEFLNQQNLILSMEN 279 89***********************************9998888776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	9.7E-4	222	281	IPR004827	Basic-leucine zipper domain
CDD	cd14703	1.14E-15	224	272	No hit	No description
SuperFamily	SSF57959	6.88E-6	233	275	No hit	No description
Gene3D	G3DSA:1.20.5.170	8.8E-8	233	276	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MANSKGSTNI RSLMYSGKHA LLPPKSPFYS LIGSKAVQKP REGNTHHQRT SSESLLIEEQ 60 PSWLDDLLNE PETPVRKGGH RRSSSDSFAY FDVSNTSITD YAAQDENKYR SMISVPSQGS 120 QEFDYHRDAR HTSFYPEASL LKQKNRPWDS SSSAGAHSSS LPSARESIAV QSSGSLCAPR 180 ELEAVSSSAS EKQDPAESGS HDPAKASSEK KDNTHNKASG SDTDTKRAKQ QFAQRSRVRK 240 LQYIAELERN VQALQAEGSE VSAELEFLNQ QNLILSMENK ALKQRLEX

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_38.34

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT135583	1e-60	BT135583.1 Lotus japonicus clone JCVI-FLLj-21M13 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021287045.1	1e-150	uncharacterized protein At4g06598-like
Swissprot	Q8W3M7	4e-79	Y4598_ARATH; Uncharacterized protein At4g06598
TrEMBL	A0A061E768	1e-148	A0A061E768_THECC; Basic-leucine zipper transcription factor family protein isoform 1
STRING	evm.model.supercontig_38.34	0.0	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3360	24	44
Representative plant	OGRP4252	12	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58110.2	6e-96	bZIP family protein

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_38.34

Publications ? help Back to Top
Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4. DNA Res., 2001. 8(6): p. 285-90 [PMID:11853315]