PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_376.4
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family MYB
Protein Properties Length: 224aa    MW: 25329.2 Da    PI: 9.2402
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_376.4genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.53.2e-183984147
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
              Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                                 +g+W++eEd +l ++v ++G+++W++I+r++  gR++k+c++rw + 
  evm.model.supercontig_376.4 39 KGPWSAEEDRILTRLVDRYGPRNWSLISRYIK-GRSGKSCRLRWCNQ 84
                                 79*****************************9.***********985 PP
2Myb_DNA-binding55.31.6e-1793135347
                                  SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
              Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                  ++++ Ede ++ a++++G++ W+tIar ++ gRt++ +k++w++ 
  evm.model.supercontig_376.4  93 PFSPAEDETILAAHARYGNR-WATIARLLP-GRTDNAVKNHWNST 135
                                  79******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.5893489IPR017930Myb domain
SuperFamilySSF466892.34E-3136132IPR009057Homeodomain-like
SMARTSM007174.9E-163887IPR001005SANT/Myb domain
PfamPF002492.5E-173984IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-244092IPR009057Homeodomain-like
CDDcd001672.33E-144183No hitNo description
SMARTSM007173.8E-1590138IPR001005SANT/Myb domain
PROSITE profilePS5129421.33290140IPR017930Myb domain
PfamPF002491.2E-1493135IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-2393139IPR009057Homeodomain-like
CDDcd001671.05E-1193136No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MEPINYTCFP STSSSDSSSS DSSFSSKSPR DPTNSDRIKG PWSAEEDRIL TRLVDRYGPR  60
NWSLISRYIK GRSGKSCRLR WCNQLSPNVQ HRPFSPAEDE TILAAHARYG NRWATIARLL  120
PGRTDNAVKN HWNSTLKRRA RELLPQQRQQ VMTGGSMEEE ELTALTLAPP GRRGCGGGLV  180
VEEEEERRRE NFPAGFWDAL RDVIAREVRD YVTSSLTDFS KSH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-41381403105MYB PROTO-ONCOGENE PROTEIN
1h88_C3e-413414053159MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-413414053159MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-41381403105C-Myb DNA-Binding Domain
1msf_C2e-41381403105C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_376.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021910959.11e-165transcription factor MYB117-like
TrEMBLA0A2C9VYF45e-92A0A2C9VYF4_MANES; Uncharacterized protein
STRINGevm.model.supercontig_376.41e-164(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM145531122
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50060.13e-58myb domain protein 77