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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
evm.model.supercontig_37.136 |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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| Family |
bZIP |
| Protein Properties |
Length: 265aa MW: 28643.1 Da PI: 6.4986 |
| Description |
bZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| evm.model.supercontig_37.136 | genome | ASGPB | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | bZIP_1 | 30.6 | 7.4e-10 | 89 | 135 | 5 | 51 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51
k +r NReA r++R++Kka+ + Le++v +L a N++L k+l+
evm.model.supercontig_37.136 89 KPKKRPVGNREAVRKYREKKKARAASLEDEVVKLRALNQQLLKRLQG 135
66788899**********************************99974 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0071294 | Biological Process | cellular response to zinc ion |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 265 aa
Download sequence Send
to blast |
MDDGELEFSN QEVFSSPNMG DLPGCCSMDS FFDELLKDTH ACTHTHTCNP PGPDFSHTHT 60
CFHVHTKILP ASNEEKVSTD DTAESSEKKP KKRPVGNREA VRKYREKKKA RAASLEDEVV 120
KLRALNQQLL KRLQGQAALE AEIARLKCLL VDIRGRIEGE IGSFPYQKPA NVNLPAANMP 180
GAYVMNPCNM QCDDQVYCLH SGVDGRSGEV VSLNGQGVSG CEFEHLQCLA GNNSGIKELP 240
ACGAGNAATN VSSGANKRKG ETHS*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporter ZIP12 during growth in zinc-deficient conditions. ZIP12 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269|PubMed:20479230, ECO:0000269|PubMed:26306426}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Induced by zinc deficiency. {ECO:0000269|PubMed:20479230}. |
| Publications
? help Back to Top |
- Azevedo H, et al.
Transcriptomic profiling of Arabidopsis gene expression in response to varying micronutrient zinc supply.
Genom Data, 2016. 7: p. 256-8
[PMID:26981422] - Castro PH, et al.
Phylogenetic analysis of F-bZIP transcription factors indicates conservation of the zinc deficiency response across land plants.
Sci Rep, 2017. 7(1): p. 3806
[PMID:28630437] - Nazri AZ,Griffin JHC,Peaston KA,Alexander-Webber DGA,Williams LE
F-group bZIPs in barley-a role in Zn deficiency.
Plant Cell Environ., 2017. 40(11): p. 2754-2770
[PMID:28763829] - Ezer D, et al.
The G-Box Transcriptional Regulatory Code in Arabidopsis.
Plant Physiol., 2017. 175(2): p. 628-640
[PMID:28864470]
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