PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

bHLH

Protein Properties

Length: 321aa MW: 35690.5 Da PI: 6.6245

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_36.191	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40	6.8e-13	116	167	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ + ++ + a+i A++++k+L+ evm.model.supercontig_36.191 116 QRMTHIAVERNRRKQMNEFLAVLRSLMPPS---YVQRGDQASIIGGAINFVKELE 167 79**************************...9****************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.91E-13	114	171	No hit	No description
Gene3D	G3DSA:4.10.280.10	8.6E-13	115	171	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.7E-16	115	179	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.091	115	166	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.1E-10	116	167	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.0E-9	121	172	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS51671	9.56	234	315	IPR002912	ACT domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008152	Biological Process	metabolic process
GO:0016597	Molecular Function	amino acid binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence Send to blast
MALEAVVYSY YNPCKDFYSL LTEGGGYDQY LFQEEDKPLL GLHENSSFRD GKESWDHSLY 60 SSPEVCTATV DQSVHGVSGG FSLMEPRVRP ETAAAGGRRK RRRTKSTKNK EEIENQRMTH 120 IAVERNRRKQ MNEFLAVLRS LMPPSYVQRG DQASIIGGAI NFVKELEQLL QSMEAHKRTS 180 NGVSPAVPFA DFFTFPQFST CTAATECSAA VNSPCVSAKN AAEIEVSMIE SHANVKILSK 240 KRPRQLLTIV AEFQRLKLSI LHLNVTTTFD EMVLYSISIK VEEGCQFNTA DDIAAGVNNM 300 LCRIQEEAAL ELSGRLITIS *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	98	102	RKRRR
2	98	103	RKRRRT
3	116	127	RMTHIAVERNRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_36.191

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189575	3e-37	AC189575.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH011C10, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021900736.1	0.0	transcription factor bHLH96-like
Swissprot	Q9C7T4	3e-86	BH096_ARATH; Transcription factor bHLH96
TrEMBL	A0A061FEL6	1e-110	A0A061FEL6_THECC; DNA binding protein, putative
STRING	evm.model.supercontig_36.191	0.0	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1116	27	102
Representative plant	OGRP253	15	131

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72210.1	7e-84	bHLH family protein

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_36.191

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]