 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
evm.model.supercontig_36.180 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 269aa MW: 30760.1 Da PI: 5.0328 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| evm.model.supercontig_36.180 | genome | ASGPB | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 60.1 | 3.5e-19 | 59 | 112 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k++++t +q+++Le+ Fe+++++ e++ +LA++lgL+ rqV +WFqNrRa++k
evm.model.supercontig_36.180 59 KKRRLTLDQVKALEKNFEMENKLEPERKMKLAEELGLQPRQVAIWFQNRRARWK 112
566899***********************************************9 PP
|
| 2 | HD-ZIP_I/II | 130.9 | 4.9e-42 | 58 | 150 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81
ekkrrl+ +qvk+LE++Fe+e+kLeperK++la+eLglqprqva+WFqnrRAR+ktkqlEkdy Lk++ydalk++ ++Le
evm.model.supercontig_36.180 58 EKKRRLTLDQVKALEKNFEMENKLEPERKMKLAEELGLQPRQVAIWFQNRRARWKTKQLEKDYGLLKANYDALKNDYSSLE 138
69******************************************************************************* PP
HD-ZIP_I/II 82 keveeLreelke 93
+e+e+L+++lke
evm.model.supercontig_36.180 139 QEKEALTSKLKE 150
*********997 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 269 aa
Download sequence Send
to blast |
MERLGSSDSL TALISIFPPK EEKSKQSKQG YSSEFQAMLD SFIEEDYLEE VSHGGSTEKK 60
RRLTLDQVKA LEKNFEMENK LEPERKMKLA EELGLQPRQV AIWFQNRRAR WKTKQLEKDY 120
GLLKANYDAL KNDYSSLEQE KEALTSKLKE LKAKLKEGQA ESSNSFRQDC QILSVQSQEG 180
SDLCSREIVK EETDNINGGS SSFHDFNCSS SSNQWSEQFH IQNSRMGFGH SSSQFVKIEE 240
QSLFPADESC NFFSVDQAPT LQWYFAGH*
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 106 | 114 | RRARWKTKQ |
