PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

MYB

Protein Properties

Length: 353aa MW: 39040.8 Da PI: 6.2228

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_36.134	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	62.4	9.1e-20	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lvd+++++G g+W++ ++ g++R++k+c++rw +yl evm.model.supercontig_36.134 14 KGPWTPEEDQILVDYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	55.1	1.8e-17	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE++ +++++ lG++ W++Ia +++ gRt++++k++w+++l evm.model.supercontig_36.134 67 RGKFSQEEEQTILHLHSILGNK-WSAIATHLP-GRTDNEIKNFWNTHL 112 89******************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.3E-26	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	18.929	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	2.49E-32	11	108	IPR009057	Homeodomain-like
SMART	SM00717	5.7E-16	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	4.6E-18	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	8.00E-13	16	61	No hit	No description
PROSITE profile	PS51294	27.278	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-27	65	117	IPR009057	Homeodomain-like
SMART	SM00717	9.2E-17	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	2.4E-16	67	112	IPR001005	SANT/Myb domain
CDD	cd00167	1.45E-12	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009733	Biological Process	response to auxin
GO:0009737	Biological Process	response to abscisic acid
GO:0009751	Biological Process	response to salicylic acid
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MGRSPCCDEN GLKKGPWTPE EDQILVDYIQ KHGHGSWRAL PKLAGLNRCG KSCRLRWTNY 60 LRPDIKRGKF SQEEEQTILH LHSILGNKWS AIATHLPGRT DNEIKNFWNT HLKKKLIQMG 120 IDPMTHQPRT DLFASLPQLI ALASLKDLMD RYNPLDEHVR LQAEAAQLAK LQYLQYLLQQ 180 STASLTSSND ITDQLDVLAL LNSIPHTKEE NNPHPTLLNS QEINNTPPAA SFSLGLGGSQ 240 PLHHPSQLSH LPDPPPVTFN FQTSSLNISD DYQVSQNSDF TTLVSQAADH YNPQPDCSWL 300 NLPSPTPPVI PPTLTETSLS NAGGVAESSF GGGSPYNWPE FGSEDPVMHG IS*

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MGRSPCCDEN GLKKGPWTPE EDQILVDYIQ KHGHGSWRAL PKLAGLNRCG KSCRLRWTNY  60
LRPDIKRGKF SQEEEQTILH LHSILGNKWS AIATHLPGRT DNEIKNFWNT HLKKKLIQMG  120
IDPMTHQPRT DLFASLPQLI ALASLKDLMD RYNPLDEHVR LQAEAAQLAK LQYLQYLLQQ  180
STASLTSSND ITDQLDVLAL LNSIPHTKEE NNPHPTLLNS QEINNTPPAA SFSLGLGGSQ  240
PLHHPSQLSH LPDPPPVTFN FQTSSLNISD DYQVSQNSDF TTLVSQAADH YNPQPDCSWL  300
NLPSPTPPVI PPTLTETSLS NAGGVAESSF GGGSPYNWPE FGSEDPVMHG IS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	5e-30	12	116	5	108	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269\|PubMed:24902892}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00180	DAP	Transfer from AT1G34670	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_36.134

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269\|PubMed:24902892}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021900768.1	0.0	transcription factor MYB41
Swissprot	Q9S9Z2	1e-115	MYB93_ARATH; Transcription factor MYB93
TrEMBL	A0A2N9F9B0	1e-152	A0A2N9F9B0_FAGSY; Uncharacterized protein
STRING	evm.model.supercontig_36.134	0.0	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4	28	2646
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34670.1	1e-102	myb domain protein 93

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_36.134

Publications ? help Back to Top
Gibbs DJ,Coates JC AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis. Plant Signal Behav, 2014. 9(10): p. e970406 [PMID:25482809]