PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_36.12

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

C2H2

Protein Properties

Length: 426aa MW: 46844.8 Da PI: 9.7874

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_36.12	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.7	4.4e-05	191	213	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp Cg+ F ++nL+ H+ + H evm.model.supercontig_36.12 191 SCPECGEIFMKPENLELHQAVrH 213 6******************9888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.182	190	218	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	192	213	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	1.15E-22	215	424	No hit	No description
Gene3D	G3DSA:3.90.228.10	1.1E-16	216	423	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 426 aa Download sequence Send to blast
MGKLKNKRNS ADETHQNQNK PPLKAEKPPS WALLRGIFNC KHIQPQDHEQ QQQKNQEPQQ 60 QGKQPKKQKQ QAVEEISSKK CKKMKCSGSL CSNTKVMHRP ETSSPEGQKK RASMEIASSR 120 SMKAPLQEIN GVGVVSSTNS SLSISSSSSI NGGSFRGMPF RRFSGCYECR MVVDPVLGIT 180 RDPSLRGSIS SCPECGEIFM KPENLELHQA VRHAVSELGP EDTSKNIVEI IFQSSWLKKQ 240 TPICKIDRIL KVHNTQKTIT KFEEYRDSIK AKATKFPKKH PRCIADGNEL LRFHCTTVAC 300 SLGLNGSSNL CNSIPHCNVC SIIKNGFKVA KEVDTKGILT TATSGKAHDK AGGVDQDGGN 360 EKRAMLVCRV IAGRVKKTTE GQGMGGMEEY DSVAGAVGLY SNLDELYVFN PKAILPCFVV 420 IYRGF*

Sequence ? help Back to Top

Protein Sequence Length: 426 aa Download sequence Send to blast

MGKLKNKRNS ADETHQNQNK PPLKAEKPPS WALLRGIFNC KHIQPQDHEQ QQQKNQEPQQ  60
QGKQPKKQKQ QAVEEISSKK CKKMKCSGSL CSNTKVMHRP ETSSPEGQKK RASMEIASSR  120
SMKAPLQEIN GVGVVSSTNS SLSISSSSSI NGGSFRGMPF RRFSGCYECR MVVDPVLGIT  180
RDPSLRGSIS SCPECGEIFM KPENLELHQA VRHAVSELGP EDTSKNIVEI IFQSSWLKKQ  240
TPICKIDRIL KVHNTQKTIT KFEEYRDSIK AKATKFPKKH PRCIADGNEL LRFHCTTVAC  300
SLGLNGSSNL CNSIPHCNVC SIIKNGFKVA KEVDTKGILT TATSGKAHDK AGGVDQDGGN  360
EKRAMLVCRV IAGRVKKTTE GQGMGGMEEY DSVAGAVGLY SNLDELYVFN PKAILPCFVV  420
IYRGF*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_36.12

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021900801.1	0.0	uncharacterized protein LOC110816791
TrEMBL	A0A314Y302	0.0	A0A314Y302_PRUYE; Uncharacterized protein
STRING	evm.model.supercontig_36.12	0.0	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1916	28	80
Representative plant	OGRP661	14	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	1e-101	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_36.12