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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_3486.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 61aa MW: 6972.94 Da PI: 10.8148 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 96.2 | 1.4e-30 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 +rienk+nrqvtfskRrng+lKK +ELSvLCdae+a+iifss+gkl+e+ evm.model.supercontig_3486.1 9 ERIENKINRQVTFSKRRNGLLKKGYELSVLCDAEIALIIFSSRGKLFEFG 58 69**********************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 4.8E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.23 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.22E-28 | 2 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.81E-35 | 2 | 59 | No hit | No description |
PRINTS | PR00404 | 1.3E-31 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.9E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-31 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-31 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 61 aa Download sequence Send to blast |
MGRGKVVLER IENKINRQVT FSKRRNGLLK KGYELSVLCD AEIALIIFSS RGKLFEFGSH 60 X |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 2e-21 | 1 | 59 | 1 | 59 | MEF2C |
5f28_B | 2e-21 | 1 | 59 | 1 | 59 | MEF2C |
5f28_C | 2e-21 | 1 | 59 | 1 | 59 | MEF2C |
5f28_D | 2e-21 | 1 | 59 | 1 | 59 | MEF2C |
6byy_A | 2e-21 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6byy_B | 2e-21 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6byy_C | 2e-21 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6byy_D | 2e-21 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6bz1_A | 2e-21 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6bz1_B | 2e-21 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6bz1_C | 2e-21 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6bz1_D | 2e-21 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Forms a heterodimer via the K-box domain with AG, that could be involved in genes regulation during floral meristem development. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_3486.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007038532.2 | 6e-32 | PREDICTED: MADS-box transcription factor 6 isoform X2 | ||||
Refseq | XP_017973049.1 | 5e-32 | PREDICTED: MADS-box transcription factor 6 isoform X1 | ||||
Refseq | XP_017973050.1 | 4e-32 | PREDICTED: MADS-box transcription factor 6 isoform X3 | ||||
Refseq | XP_022737294.1 | 9e-33 | MADS-box transcription factor 6-like | ||||
Swissprot | P29386 | 8e-31 | AGL6_ARATH; Agamous-like MADS-box protein AGL6 | ||||
TrEMBL | A0A0D2SS44 | 5e-31 | A0A0D2SS44_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A2N9FVP9 | 2e-31 | A0A2N9FVP9_FAGSY; Uncharacterized protein | ||||
STRING | evm.model.supercontig_3486.1 | 2e-35 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM78 | 28 | 413 |
Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45650.1 | 3e-33 | AGAMOUS-like 6 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_3486.1 |
Publications ? help Back to Top | |||
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