 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
evm.model.supercontig_348.7 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
|
| Family |
M-type_MADS |
| Protein Properties |
Length: 381aa MW: 42016.2 Da PI: 4.2795 |
| Description |
M-type_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| evm.model.supercontig_348.7 | genome | ASGPB | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 42.8 | 6.9e-14 | 2 | 42 | 4 | 44 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
en+ qvtfsk r ++KKA+EL++LC +v iifs+ +
evm.model.supercontig_348.7 2 ENEASLQVTFSKHRSSLFKKASELCTLCRPDVGHIIFSPGD 42
788899********************************965 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 381 aa
Download sequence Send
to blast |
MENEASLQVT FSKHRSSLFK KASELCTLCR PDVGHIIFSP GDRAFCYGNP NIDIVIDRFL 60
SIDVRPARDP HNDNDTQQTI SRITEALDKE EAVRKRGKEL KQRRKGLMKE LWYTRSMDKF 120
NLEELEVLDA GMKALWNDVA ELAKKLKKEQ GNSSSAEGSP RDDGMFYSDP AIMGLTTLPM 180
PSMPSNPTHE YAPSSINSTP PLSSFCNLDS GNPNIMMMDN PLNDSSMALD PVDDLKAMPR 240
DLFNNLVMIE SDDPIASLNA GDNPYIIFYA FGNQIATMDI NLSNDPNIGP NEFFNPSTMP 300
HAPNDPISTT SDALNMIRIV PNDSNLDSVF DGFTLEMLFA DPLDDENFIV DNPNEAANGD 360
NPKKMPPPLA GNVLGSGQGF *
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | KJ410395 | 0.0 | KJ410395.1 Carica papaya sex-specific marker RX15_10 genomic sequence. |
| Orthologous Group
? help Back to Top |
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Representative plant | OGRP16 | 17 | 761 |
