PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_348.6
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family M-type_MADS
Protein Properties Length: 364aa    MW: 40208.4 Da    PI: 4.6705
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_348.6genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF49.36.2e-162064246
                                 ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
                       SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46
                                 + en+   qvtfsk r  ++KKA+EL++LC  +v +i+fs+ ++ 
  evm.model.supercontig_348.6 20 KMENEASLQVTFSKHRSSLFKKASELCTLCRPDVGLIVFSPGNRA 64
                                 6799999*********************************98875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006620.5071171IPR002100Transcription factor, MADS-box
SMARTSM004321.0E-201170IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.36E-211384IPR002100Transcription factor, MADS-box
PRINTSPR004049.1E-151333IPR002100Transcription factor, MADS-box
PfamPF003191.5E-182067IPR002100Transcription factor, MADS-box
PRINTSPR004049.1E-153348IPR002100Transcription factor, MADS-box
PRINTSPR004049.1E-154869IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MADEGTSSKS KSRQKIESKK MENEASLQVT FSKHRSSLFK KASELCTLCR PDVGLIVFSP  60
GNRAFCYGNP NIDIVIDRFL SIDVRPARDP DNDNDTQQTI SRITEALDKE EAARKRGKEL  120
KQRRKGLMKE LWYTRSMDKF NLKELEVLDA GMKALWNDVA ELAKKLKKEQ GNSSSAEGSP  180
RDDGLFYSDP AMKGLTTLPM PSMPSNPTHE YAPSSTNSTP PLSSFCNLDS GNPNIMMMDN  240
LLNDSSMALD PVDDLKAMLR DLFNNLVMIE SDDPIATLNA RDNPDIMSDA LRNQIATMDI  300
NLSNDPNIGP NVFFNPSTMP HAPNDPISTT SDALNMIRIV PDDLNLDSVF DGFSRDVVCG  360
SIG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_348.6
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ4103950.0KJ410395.1 Carica papaya sex-specific marker RX15_10 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021911410.10.0agamous-like MADS-box protein AGL62
STRINGevm.model.supercontig_348.60.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.15e-33AGAMOUS-like 62