 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
evm.model.supercontig_347.5 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
|
Family |
M-type_MADS |
Protein Properties |
Length: 327aa MW: 35707 Da PI: 4.0432 |
Description |
M-type_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
evm.model.supercontig_347.5 | genome | ASGPB | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 43.9 | 3.1e-14 | 2 | 44 | 4 | 46 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46
en+ qvtfsk r ++KK +EL++LC +v +i+fs+ ++
evm.model.supercontig_347.5 2 ENEASLQVTFSKHRSSLFKKTSELCTLCRPDVGLIVFSPGNRA 44
788899********************************98875 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 327 aa
Download sequence Send
to blast |
MENEASLQVT FSKHRSSLFK KTSELCTLCR PDVGLIVFSP GNRAFCYGNP NIDIVIDRFL 60 SIDVRPARDP DNENDTQQII SRITEVLKTR RRQQGSELKE LEVLDACMRA LWNDVAELAK 120 KLKKEQGNSS SAEGSPRDDG MFYSDPAMKA LTTLPMPSMP SNPTHEYAPS CTNSTPPLNS 180 FCNLDSGNPN IMMMDNPLND SSMALDPVDD LKAMPRDLFN NLVMIESDDP IASLNAGDNP 240 DIMSDAFGNQ IATMDINLSN DPISGLMNDS NLDSVFDGFT LEMLFADPLD DENFIVDNPN 300 EAANGDNPKT MPPPLAGNVL GSGQGF*
|
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | KJ410395 | 0.0 | KJ410395.1 Carica papaya sex-specific marker RX15_10 genomic sequence. |
Orthologous Group
? help Back to Top |
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP16 | 17 | 761 |