 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
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TF ID |
evm.model.supercontig_347.14 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
|
Family |
M-type_MADS |
Protein Properties |
Length: 382aa MW: 42061.5 Da PI: 4.6321 |
Description |
M-type_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
evm.model.supercontig_347.14 | genome | ASGPB | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 53.7 | 2.6e-17 | 20 | 64 | 2 | 46 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46
+ en+ qvtfsk r ++KKA+EL++LC +v++i+fs+ ++
evm.model.supercontig_347.14 20 KMENEASLQVTFSKHRSSLFKKASELCTLCRPDVCLIVFSPGNRA 64
6799999*********************************98875 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 382 aa
Download sequence Send
to blast |
MANEGTSSKS KGHQKIELKK MENEASLQVT FSKHRSSLFK KASELCTLCR PDVCLIVFSP 60 GNRAFCYGNP NIDIVIDRFL SIDVRPAQEK EEAARKRGKE LKQRRKGLKK ELWYTHSMDK 120 FSLEELEVFD AGMKALWNDV SELAKKLKKE QGNSSSAEGS PRDDGMFYSD PAMKALITLP 180 MPSMPSNPTH EYAPSSTNST PPLSRFCNLD SGNPTIMMMN NSLNDSCMAL DPVDDLKAMP 240 RDLFNNLVMI ESDDPIAALN AGDNPDIMSD AFGNQIATMD INLSNDPNIG PNEFFNPSTM 300 PHTPNDPISS TSNALNMIRI VPDDSNLHSV FDGFTLEMLF ADPLDDENFI VDNPNEAANG 360 DNPKTMPPPL AGNVLRSGQG F*
|
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KJ410395 | 0.0 | KJ410395.1 Carica papaya sex-specific marker RX15_10 genomic sequence. |
Orthologous Group
? help Back to Top |
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP16 | 17 | 761 |