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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_347.13 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 274aa MW: 30162.8 Da PI: 6.7796 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 62.7 | 4.1e-20 | 18 | 64 | 3 | 49 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 i+ +n qvtf+k r+gi+KKA+E+S+LC+ae+aviifs+ k++ + evm.model.supercontig_347.13 18 IKKATNLQVTFAKCRAGIFKKASEISTLCGAEIAVIIFSPAKKVFFF 64 8999*************************************999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 20.829 | 8 | 68 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.4E-22 | 8 | 67 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-14 | 10 | 30 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.1E-23 | 11 | 93 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 9.0E-20 | 17 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-14 | 30 | 45 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-14 | 45 | 66 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 274 aa Download sequence Send to blast |
MEPPKKLKGP QMIEMVKIKK ATNLQVTFAK CRAGIFKKAS EISTLCGAEI AVIIFSPAKK 60 VFFFVSPSVE KLINRFSGPI EQHHSANRYD MNLSQLQQFQ AALEELYENV IKVAKENDAE 120 ENNINPNSDD QLFLGSFSNG TGLPFESIPL NAIGCPINMV NPNKNRVNSN KVNPNVISPS 180 MINPNMVNPA AYMKILRDML NNNNPNIPLS NSMIPNNPNM VSNVMPISSN PTNMMLPAAN 240 LMINNDQNLV PADHMMMNND QNMMVGASDA IND* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_347.13 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC238637 | 0.0 | AC238637.1 Carica papaya BAC clone 99B01, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021912041.1 | 0.0 | myocyte-specific enhancer factor 2A-like | ||||
TrEMBL | A0A438JMZ7 | 2e-27 | A0A438JMZ7_VITVI; Agamous-like MADS-box protein AGL62 | ||||
TrEMBL | D7T3N5 | 3e-27 | D7T3N5_VITVI; Uncharacterized protein | ||||
STRING | evm.model.supercontig_347.13 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 1e-26 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_347.13 |