 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
evm.model.supercontig_34.36 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
|
| Family |
NF-YC |
| Protein Properties |
Length: 279aa MW: 31398.4 Da PI: 6.5731 |
| Description |
NF-YC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| evm.model.supercontig_34.36 | genome | ASGPB | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NF-YC | 178.9 | 4.6e-56 | 92 | 196 | 1 | 102 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdi 79
ql++fw++q ie++tdfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+di
evm.model.supercontig_34.36 92 QLQMFWTNQmqeIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDI 173
89******988889******************************************************************** PP
NF-YC 80 aaavtrtdifdflvdivprdelk 102
aaa++rtd+fdflvdi+prdelk
evm.model.supercontig_34.36 174 AAAISRTDVFDFLVDIIPRDELK 196
********************875 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 279 aa
Download sequence Send
to blast |
MDHSEQVQTQ QESQKQHHQQ QQQSVMGVVS GTGQMAYGNH PYQTAPMVAS GTAVAVPSAT 60
QPPTSFTNSQ HQLAFQQAQH FHHQQQQQQQ QQLQMFWTNQ MQEIEQTTDF KNHSLPLARI 120
KKIMKADEDV RMISAEAPVI FAKACEMFIL ELTLRSWIHT EENKRRTLQK NDIAAAISRT 180
DVFDFLVDII PRDELKEEGL GVTKATLPVV GSPADMPYYY VPPQHPVGPA GMIMGKPVDH 240
QAALYAAQQP RPPTMAFMPW PQGQAQQQPQ HQQQQTDS*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:26542958). Component of the NF-Y/HAP transcription factor complex (By similarity). {ECO:0000250, ECO:0000269|PubMed:26542958}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases in the middle of daytime, peaks around the end of the light period and gradually decreases during the dark period and beginning of daylight. {ECO:0000269|PubMed:26542958}. |
