PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

ERF

Protein Properties

Length: 431aa MW: 48433.7 Da PI: 5.4578

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_34.132	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	60.4	4.3e-19	213	263	2	56
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+tae+Aa a+++ + kl+ge evm.model.supercontig_34.132 213 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAAMAYDREAFKLRGE 263 59****9.******955...5************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	2.87E-33	212	271	No hit	No description
PROSITE profile	PS51032	22.998	213	270	IPR001471	AP2/ERF domain
SMART	SM00380	4.0E-39	213	276	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	5.95E-23	213	271	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	6.1E-32	213	271	IPR001471	AP2/ERF domain
Pfam	PF00847	2.5E-12	214	263	IPR001471	AP2/ERF domain
PRINTS	PR00367	7.4E-11	214	225	IPR001471	AP2/ERF domain
PRINTS	PR00367	7.4E-11	236	252	IPR001471	AP2/ERF domain
SuperFamily	SSF101447	1.39E-5	303	313	No hit	No description
SuperFamily	SSF101447	1.39E-5	346	386	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009651	Biological Process	response to salt stress
GO:2000070	Biological Process	regulation of response to water deprivation
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 431 aa Download sequence Send to blast
MEAGNKSGKS KKGVCVDEPE TMMGKEEDQV WEIDRKVEED LELSLERRQW KTVFDESSMS 60 DRPLKKIRSP DRHGGHDPSL TLCNSPPPPP PSGFPPMFPF AFDSSQRPFN LPQQFPTSSS 120 SQLPAFHSPF QPHQNQQHMI SFGPQHGNLG YPPFFTRESP MAGQHQQQQL LQYWSNALNP 180 SPRGRMMMMM NRFGQDNRPL FRPTLQPLNT TKLYRGVRQR HWGKWVAEIR LPRNRTRLWL 240 GTFDTAEDAA MAYDREAFKL RGENARLNFP ERFFNKEKSA STPSCSAASS FPTLQISTTE 300 TMPPPPPPPP PPPQEDNPDS DSGIGSSEAT ANDEVQGSGA GDNQELAWGA VAEAWFNSIP 360 AGWGPGSPVW DDLDTTSNLL FPSNLGFQEQ EFMSQHEQTH NYREQDNTGS ASSSSSSSCP 420 MRPFFWKDQD *

Sequence ? help Back to Top

Protein Sequence Length: 431 aa Download sequence Send to blast

MEAGNKSGKS KKGVCVDEPE TMMGKEEDQV WEIDRKVEED LELSLERRQW KTVFDESSMS  60
DRPLKKIRSP DRHGGHDPSL TLCNSPPPPP PSGFPPMFPF AFDSSQRPFN LPQQFPTSSS  120
SQLPAFHSPF QPHQNQQHMI SFGPQHGNLG YPPFFTRESP MAGQHQQQQL LQYWSNALNP  180
SPRGRMMMMM NRFGQDNRPL FRPTLQPLNT TKLYRGVRQR HWGKWVAEIR LPRNRTRLWL  240
GTFDTAEDAA MAYDREAFKL RGENARLNFP ERFFNKEKSA STPSCSAASS FPTLQISTTE  300
TMPPPPPPPP PPPQEDNPDS DSGIGSSEAT ANDEVQGSGA GDNQELAWGA VAEAWFNSIP  360
AGWGPGSPVW DDLDTTSNLL FPSNLGFQEQ EFMSQHEQTH NYREQDNTGS ASSSSSSSCP  420
MRPFFWKDQD *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	1e-20	212	272	1	62	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A	2e-20	212	277	4	70	ATERF1
3gcc_A	2e-20	212	277	4	70	ATERF1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_34.132

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX532991	0.0	JX532991.1 Carica papaya ethylene-responsive transcription factor 4 (ERF4) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021901137.1	0.0	ethylene-responsive transcription factor ERF054-like
TrEMBL	T1QCG2	0.0	T1QCG2_CARPA; Ethylene-responsive transcription factor 4
STRING	evm.model.supercontig_34.132	0.0	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2141	27	75
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20880.1	3e-55	ERF family protein

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_34.132

Publications ? help Back to Top
Li X, et al. Isolation and characterization of ethylene response factor family genes during development, ethylene regulation and stress treatments in papaya fruit. Plant Physiol. Biochem., 2013. 70: p. 81-92 [PMID:23770597]