PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_32.14

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

bZIP

Protein Properties

Length: 487aa MW: 54302.1 Da PI: 7.5923

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_32.14	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.2	1.1e-10	210	251	4	45
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k rr+++NReAAr+sR+RKka++++Le +L++ ++L evm.model.supercontig_32.14 210 AKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLTQLEQDL 251 6889*************************9777777666655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	5.3E-4	207	264	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.186	209	253	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	7.4E-8	210	252	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	5.13E-7	211	253	No hit	No description
CDD	cd14708	3.05E-21	211	261	No hit	No description
Gene3D	G3DSA:1.20.5.170	6.0E-8	212	255	No hit	No description
PROSITE pattern	PS00036	0	214	229	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	9.7E-30	292	367	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 487 aa Download sequence Send to blast
MANHRIGETG LSDSPPSNHH HHHVSYVVHG INNNPASFIN QEGSAFDFGE LEEAIVLQGV 60 KLSNDEGKGM IYYIYMYIYT CHFQQSNDAE GRELKGVRIQ KARPAATLEM FPSWPIRFHH 120 TPRVGSSKSG GESTEESGSG LNSVSEAQLD LESPITIKPS SSSSSSHHHH HLQVDMANDA 180 STPGSSNNQT PPKPTQDKRK VSSSDKQLDA KTLRRLAQNR EAARKSRLRK KAYVQQLESS 240 RIKLTQLEQD LQRARSQGLF LVGCGGGGGN ISPGGAIFDM EYGRWVEDDE RHISELRRGL 300 QAHLSDKDLG VMVDGYISHY DEIFRLRGIA AKSDVFHLIT GMWTTPAERC FIWMGGFRPS 360 DLIKMLISQL DPLTEQQVMG IYSLQHSSQQ AEEALYQGLE QLQQSLMDTI AGGPLVDGMQ 420 QMAVALAKIS NLEGFVRQAD NLRQQTLHQL RRILTVRQAA RCFLVIAEYY ARLRALSSLW 480 ATRPRE*

Sequence ? help Back to Top

Protein Sequence Length: 487 aa Download sequence Send to blast

MANHRIGETG LSDSPPSNHH HHHVSYVVHG INNNPASFIN QEGSAFDFGE LEEAIVLQGV  60
KLSNDEGKGM IYYIYMYIYT CHFQQSNDAE GRELKGVRIQ KARPAATLEM FPSWPIRFHH  120
TPRVGSSKSG GESTEESGSG LNSVSEAQLD LESPITIKPS SSSSSSHHHH HLQVDMANDA  180
STPGSSNNQT PPKPTQDKRK VSSSDKQLDA KTLRRLAQNR EAARKSRLRK KAYVQQLESS  240
RIKLTQLEQD LQRARSQGLF LVGCGGGGGN ISPGGAIFDM EYGRWVEDDE RHISELRRGL  300
QAHLSDKDLG VMVDGYISHY DEIFRLRGIA AKSDVFHLIT GMWTTPAERC FIWMGGFRPS  360
DLIKMLISQL DPLTEQQVMG IYSLQHSSQQ AEEALYQGLE QLQQSLMDTI AGGPLVDGMQ  420
QMAVALAKIS NLEGFVRQAD NLRQQTLHQL RRILTVRQAA RCFLVIAEYY ARLRALSSLW  480
ATRPRE*

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00131	DAP	Transfer from AT1G08320	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_32.14

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF512305	0.0	EF512305.1 Carica papaya clone Cp25 basic leucine zipper protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021901440.1	0.0	transcription factor TGA9
Swissprot	Q93XM6	0.0	TGA9_ARATH; Transcription factor TGA9
TrEMBL	A6YGE6	0.0	A6YGE6_CARPA; Basic leucine zipper protein
STRING	evm.model.supercontig_32.14	0.0	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5524	24	41
Representative plant	OGRP6496	11	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	0.0	bZIP family protein

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_32.14

Publications ? help Back to Top
Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]