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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_318.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | Dof | ||||||||
Protein Properties | Length: 345aa MW: 38164.8 Da PI: 7.4339 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 127.9 | 3e-40 | 26 | 86 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e+alkcprCdstntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rknk+ s evm.model.supercontig_318.1 26 PEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRPS 86 7899******************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 5.6E-34 | 28 | 84 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 2.0E-27 | 29 | 84 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.646 | 30 | 84 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 32 | 68 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 345 aa Download sequence Send to blast |
EMGSQSLENM LVCSKSQQER KPRPQPEQAL KCPRCDSTNT KFCYYNNYSL SQPRYFCKSC 60 RRYWTKGGTL RNVPVGGGCR KNKRPSSSSS SSASSASSKS RTHIDQLQPL TPNNINPSSL 120 ITSLPAALGY DDHHNHSNDL SLAFARLQKQ AIGQLGFDHD HHHHHPHPHQ HQQQLSILGN 180 LGNPDGILGN LGINAPASEH PGVFLTGFLG SQNPNLQNSY YGFGNGNTED HQMENNNPSN 240 GVAGHGDHHH HHQMVFPYDR EMTNATTTAV TVTTMKQEFC NGRDHDDHDQ INGNRSSQVL 300 WGFPWQINGD SNMGSAHHDL DNPGRESWTG LNSSWHGLLN SPLM* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_318.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021912192.1 | 0.0 | dof zinc finger protein DOF2.1-like | ||||
TrEMBL | A0A0K8K635 | 1e-113 | A0A0K8K635_CAJCA; Dof protein | ||||
TrEMBL | A0A151TN62 | 1e-114 | A0A151TN62_CAJCA; Dof zinc finger protein DOF2.1 (Fragment) | ||||
STRING | evm.model.supercontig_318.1 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6960 | 27 | 43 |
Representative plant | OGRP38 | 17 | 445 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28510.1 | 2e-49 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_318.1 |