PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_30.87
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family MYB
Protein Properties Length: 272aa    MW: 30451.2 Da    PI: 6.7282
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_30.87genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.81.4e-091342130
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS
              Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIart 30
                                 rg W++eEde+l++ ++ +G g+W+++++ 
  evm.model.supercontig_30.87 13 RGLWSPEEDEKLIKHITAHGHGSWSSVPKL 42
                                 788************************986 PP
2Myb_DNA-binding48.61.8e-154789145
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
              Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                                 rg++++eE+ +++++ + lG++ W+ Ia++++ gRt++++k++w+
  evm.model.supercontig_30.87 47 RGSFSAEEERIIIEVQRILGNK-WAQIAKYLP-GRTDNEVKNFWN 89
                                 899*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-13442IPR009057Homeodomain-like
SuperFamilySSF466891.09E-191088IPR009057Homeodomain-like
SMARTSM00717261244IPR001005SANT/Myb domain
PfamPF002496.6E-71342IPR001005SANT/Myb domain
PROSITE profilePS5129423.0464296IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.9E-204497IPR009057Homeodomain-like
SMARTSM007172.2E-154694IPR001005SANT/Myb domain
PfamPF002493.3E-144790IPR001005SANT/Myb domain
CDDcd001672.79E-114989No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MGHQCCNKQK VKRGLWSPEE DEKLIKHITA HGHGSWSSVP KLADVKRGSF SAEEERIIIE  60
VQRILGNKWA QIAKYLPGRT DNEVKNFWNS SIKKKLIAQA FQSPTQNLLI TSPNRSHNTN  120
ICNNNNTHVN PQPRLMSFEY PSNNSPCCFS ILNQISTTPP LESHKNIVWS ATATTTESRD  180
QLASPSPWEY ITTHHDHLQP GIFTSSPLTQ SGFETAWISG GGFQPRDLHE EKMIKCQGLD  240
SEKADVCSSS MGAFPDESLE FDIDFVELLN C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-2013967108B-MYB
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_30.87
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021901558.11e-169transcription factor MYB86-like
STRINGevm.model.supercontig_30.870.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.15e-45myb domain protein 67