PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

MIKC_MADS

Protein Properties

Length: 127aa MW: 14379.9 Da PI: 9.2328

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_30.163	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	31.5	2.2e-10	2	25	19	42
HHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 19 gilKKAeELSvLCdaevaviifss 42 g++KK + L++LCd++++vii+s+ evm.model.supercontig_30.163 2 GLMKKVSKLCTLCDVKACVIIYSP 25 9**********************8 PP
2	K-box	15.1	9.7e-07	51	91	32	73
K-box 32 qreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnell 73 + eq + +G++L++L+l +L+ L +e+ lk+i + K+e l evm.model.supercontig_30.163 51 EMEQSKKMGKSLHQLNLIDLNDLGWLIEQHLKEIQK-KMETL 91 468899****************************75.55554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00266	4.79E-18	2	58	No hit	No description
Pfam	PF00319	1.4E-8	2	26	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.96E-11	2	57	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 127 aa Download sequence Send to blast
MGLMKKVSKL CTLCDVKACV IIYSPYDSQP DVWPSPLGAQ HVLADFKRMP EMEQSKKMGK 60 SLHQLNLIDL NDLGWLIEQH LKEIQKKMET LNKSPQPQEV RDGGVMKGPS ETFTQIKENS 120 RVKKLQ*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269\|PubMed:16798889, ECO:0000305\|PubMed:26462908}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_30.163

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021910735.1	1e-83	agamous-like MADS-box protein AGL80, partial
Swissprot	Q9FJK3	1e-23	AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBL	A0A2H5NT82	5e-35	A0A2H5NT82_CITUN; Uncharacterized protein
TrEMBL	V4S796	6e-35	V4S796_9ROSI; Uncharacterized protein
TrEMBL	V4SWL0	5e-35	V4SWL0_9ROSI; Uncharacterized protein
STRING	evm.model.supercontig_30.163	1e-88	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM70	28	415
Representative plant	OGRP114	13	173

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48670.1	5e-26	AGAMOUS-like 80

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_30.163

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]