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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
evm.model.supercontig_3.516 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
|
Family |
CO-like |
Protein Properties |
Length: 449aa MW: 50678.2 Da PI: 4.9732 |
Description |
CO-like family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
evm.model.supercontig_3.516 | genome | ASGPB | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-B_box | 27.1 | 8.4e-09 | 16 | 59 | 3 | 40 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
+r C+ + +k++++fC ++ +lC+ C + H+ H++v
evm.model.supercontig_3.516 16 ARACDGCLRKRARWFCAADDAFLCQACDASVHSAnqlasrHERV 59
578*****************************667888888876 PP
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2 | CCT | 68.3 | 2.1e-23 | 394 | 437 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44
Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++
evm.model.supercontig_3.516 394 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRS 437
9*****************************************97 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 449 aa
Download sequence Send
to blast |
MMDDKKAANA MGGKTARACD GCLRKRARWF CAADDAFLCQ ACDASVHSAN QLASRHERVR 60 LQTASSNGTV VLNSRHENLA SSSPAWHQGF TRKARTPRQH HNHKHLLAQK VKDDEKTMNS 120 STDPVVPEIG SEEGSMEYEN EEQMLYRVPV FNPFAEDLCN IMTSEGFLEE APIGNHHHEE 180 DGNIGIDDYG HEDQTCELEN LHGFLPSDMD LAEFAADVES LLGVGLLDHD SCVDVKDLGL 240 VDHKVENDAC FGEKMGFVKV KEEELEGVMR GDCDLNPGFE QTLEWNFDCD SPVIGEEEEG 300 DEGEEEKKKI KRLSATVNGD VSRGEEKRNN IFLRLNYEEV ITAWASQGSP WTTGSRPELN 360 PDDGWPQYEG VCSENMRFLY GDVGGFGRGN NEEREARVSR YREKRRTRLF SKKIRYEVRK 420 LNAEKRPRMK GRFVKRSSLG NPYSYLNN*
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Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 305 | 312 | EKKKIKRL |
2 | 404 | 420 | RRTRLFSKKIRYEVRKL |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT1G25440.1 | 2e-85 | B-box type zinc finger protein with CCT domain |