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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
evm.model.supercontig_3.239 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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| Family |
MYB |
| Protein Properties |
Length: 384aa MW: 42157.5 Da PI: 4.9758 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| evm.model.supercontig_3.239 | genome | ASGPB | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 55 | 1.9e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+eEd++l+ +++++G g W+t +++ g+ R++k+c++rw +yl
evm.model.supercontig_3.239 14 KGAWTAEEDQKLIAYIQEHGEGGWRTLPQKAGLQRCGKSCRLRWANYL 61
79********************************************97 PP
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| 2 | Myb_DNA-binding | 52.6 | 1e-16 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg +++eE++ ++++++ G++ W++Iar+++ gRt++++k++w+++l
evm.model.supercontig_3.239 67 RGEFSAEEEDNIIRLHAIRGNK-WSAIARRLP-GRTDNDIKNHWNTHL 112
899*******************.*********.************996 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 384 aa
Download sequence Send
to blast |
MGRTPCCSAE GLKKGAWTAE EDQKLIAYIQ EHGEGGWRTL PQKAGLQRCG KSCRLRWANY 60
LRPDIKRGEF SAEEEDNIIR LHAIRGNKWS AIARRLPGRT DNDIKNHWNT HLKKRLVQKG 120
IDPATHKLIN GGAPSPQHDQ INPTQNQTTS SNPDDDLPSR PSRPVSLSAK LLNRVATKLV 180
ISDNHNALSE IIKNGGNTIN NVNDVRERSL MESPTESRFS RSNSITSRLL NKVATRPNML 240
QSILSSSTPA SSPSVSNGLV GGSVPFSPLT YCVDHDTAKV MNEEEDFVNM VLAEDDHGAT 300
VNNVDESSFD IDSLRDFLLD DSDISGSTGS DQTFVNGGSE SSNEGGGVEE ITTANYWNED 360
LELEEIYDGF LDFNYGSPNA QVF*
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor involved in glucosinolates biosynthesis. {ECO:0000269|PubMed:23580754, ECO:0000269|PubMed:23943862}. |
| Orthologous Group
? help Back to Top |
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM4 | 28 | 2646 |
| Representative plant | OGRP5 | 17 | 1784 |
| Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
Mol. Biol. Evol., 2006. 23(2): p. 469-78
[PMID:16280546] - Guo R, et al.
Jasmonic acid and glucose synergistically modulate the accumulation of glucosinolates in Arabidopsis thaliana.
J. Exp. Bot., 2013. 64(18): p. 5707-19
[PMID:24151308] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Frerigmann H,Gigolashvili T
MYB34, MYB51, and MYB122 distinctly regulate indolic glucosinolate biosynthesis in Arabidopsis thaliana.
Mol Plant, 2014. 7(5): p. 814-28
[PMID:24431192] - Frerigmann H,Gigolashvili T
Update on the role of R2R3-MYBs in the regulation of glucosinolates upon sulfur deficiency.
Front Plant Sci, 2014. 5: p. 626
[PMID:25426131] - Peskan-Berghöfer T, et al.
Sustained exposure to abscisic acid enhances the colonization potential of the mutualist fungus Piriformospora indica on Arabidopsis thaliana roots.
New Phytol., 2015. 208(3): p. 873-86
[PMID:26075497] - Frerigmann H,Glawischnig E,Gigolashvili T
The role of MYB34, MYB51 and MYB122 in the regulation of camalexin biosynthesis in Arabidopsis thaliana.
Front Plant Sci, 2015. 6: p. 654
[PMID:26379682] - Frerigmann H, et al.
Regulation of Pathogen-Triggered Tryptophan Metabolism in Arabidopsis thaliana by MYB Transcription Factors and Indole Glucosinolate Conversion Products.
Mol Plant, 2016. 9(5): p. 682-695
[PMID:26802248] - Stahl E, et al.
Regulatory and Functional Aspects of Indolic Metabolism in Plant Systemic Acquired Resistance.
Mol Plant, 2016. 9(5): p. 662-681
[PMID:26802249] - Bulgakov VP,Veremeichik GN,Grigorchuk VP,Rybin VG,Shkryl YN
The rolB gene activates secondary metabolism in Arabidopsis calli via selective activation of genes encoding MYB and bHLH transcription factors.
Plant Physiol. Biochem., 2016. 102: p. 70-9
[PMID:26913794] - Xu J, et al.
Pathogen-Responsive MPK3 and MPK6 Reprogram the Biosynthesis of Indole Glucosinolates and Their Derivatives in Arabidopsis Immunity.
Plant Cell, 2016. 28(5): p. 1144-62
[PMID:27081184] - Miao H, et al.
Glucose enhances indolic glucosinolate biosynthesis without reducing primary sulfur assimilation.
Sci Rep, 2016. 6: p. 31854
[PMID:27549907]
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