PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_3.196
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family MIKC_MADS
Protein Properties Length: 259aa    MW: 29781.9 Da    PI: 8.5788
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_3.196genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF96.98.3e-31959151
                                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                 krienk+nrqvtf+kRrng+lKKA+ELSvLCda++++iifs++gklye++s
  evm.model.supercontig_3.196  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDADISLIIFSNRGKLYEFCS 59
                                 79***********************************************96 PP
2K-box91.31.7e-3010819216100
                        K-box  16 slqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                                  +++qe+ kLk++++ Lqr+qR+llGedL +L+ keL+qLe++Le+slk+iRs+K+++++ q+ +lq++e+ l e+n++Lrkk
  evm.model.supercontig_3.196 108 QSYQEYLKLKARVDVLQRSQRNLLGEDLAPLDTKELEQLEHRLETSLKQIRSTKTQFMIGQLADLQNREQILLEANRSLRKK 189
                                  5789****************************************************************************** PP

                        K-box  98 lee 100
                                  lee
  evm.model.supercontig_3.196 190 LEE 192
                                  987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.5E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.137161IPR002100Transcription factor, MADS-box
CDDcd002651.54E-43278No hitNo description
SuperFamilySSF554552.49E-33276IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-32323IPR002100Transcription factor, MADS-box
PfamPF003192.9E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-323859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129714.936106196IPR002487Transcription factor, K-box
PfamPF014866.8E-26107190IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD ADISLIIFSN RGKLYEFCSS  60
SSMVEMLEKY YQCSYGAQGI PNQPVHEIQF HSDIMRPEEN NYKHRGMQSY QEYLKLKARV  120
DVLQRSQRNL LGEDLAPLDT KELEQLEHRL ETSLKQIRST KTQFMIGQLA DLQNREQILL  180
EANRSLRKKL EEGSSQFPIR LDWEPSCQSV HLPANSGGFF YPLQTNSFGY HPLATEEVSF  240
VAGHNQNVSG FSMPGWML*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A7e-3010719318104Developmental protein SEPALLATA 3
4ox0_B7e-3010719318104Developmental protein SEPALLATA 3
4ox0_C7e-3010719318104Developmental protein SEPALLATA 3
4ox0_D7e-3010719318104Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_3.196
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021909244.11e-174MADS-box protein CMB1-like
SwissprotQ8LLR21e-101MADS2_VITVI; Agamous-like MADS-box protein MADS2
TrEMBLA0A2I4QQT51e-110A0A2I4QQT5_HEVBR; HbMADS-box protein
STRINGevm.model.supercontig_3.1960.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32892765
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02310.15e-92MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]