PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_3.115

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

Dof

Protein Properties

Length: 291aa MW: 31506.7 Da PI: 8.0222

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_3.115	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.5	3.3e-39	40	101	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 k++al+cprC s+ntkfCyynnyslsqPryfCk+CrryWt+GG+lrnvPvGgg+rk k+sss evm.model.supercontig_3.115 40 KDQALNCPRCSSNNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKTKRSSS 101 57999*****************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-25	33	92	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.4E-33	41	98	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.901	44	98	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	46	82	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MESGTAQWPQ GIGVVKTMST ESTCSRSPPL LDRKTCRPLK DQALNCPRCS SNNTKFCYYN 60 NYSLSQPRYF CKTCRRYWTE GGSLRNVPVG GGSRKTKRSS SSSPSTPLSS STKLNSTTTT 120 THQNPNKIHG SQELNLAYPP PDHHDYSTFV DDHHLHQNPT NSSPMELFKT EIITSRNLSS 180 FMAIPTTTTT TSSSPHHDSV YSSGLTLQEL NKPTLSFSLD GLEGCLQLQG GGVQESGARL 240 LFPMDQGTKQ ADPIQIQFEN NHNNRGDDDG STGGFWGSGM LGGGGGGGSW *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	277	288	SGMLGGGGGGGS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_3.115

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021909448.1	0.0	dof zinc finger protein DOF1.8-like
TrEMBL	A0A061G2L6	5e-75	A0A061G2L6_THECC; F-box family protein, putative isoform 1
TrEMBL	A0A438BU51	7e-75	A0A438BU51_VITVI; Dof zinc finger protein DOF4.6
TrEMBL	F6H7D0	7e-75	F6H7D0_VITVI; Uncharacterized protein
STRING	evm.model.supercontig_3.115	0.0	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM19643	6	7
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64620.1	2e-34	Dof family protein

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_3.115