PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_29.96
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family C2H2
Protein Properties Length: 335aa    MW: 38236.7 Da    PI: 9.6541
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_29.96genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.00033106129123
                                  EEETTTTEEESSHHHHHHHHHH.T CS
                      zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                                  y C +Cg++F +++ + +H +  H
  evm.model.supercontig_29.96 106 YLCRICGRRFYTNEKFINHFKQiH 129
                                  56*****************88766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10101.5E-1024110IPR029060PIN domain-like
PfamPF019363.4E-729258IPR021139NYN domain, limkain-b1-type
SuperFamilySSF576673.73E-5104132No hitNo description
PROSITE profilePS5015711.177106134IPR007087Zinc finger, C2H2
PROSITE patternPS000280108129IPR007087Zinc finger, C2H2
CDDcd061671.74E-14180259No hitNo description
Gene3DG3DSA:3.40.50.10101.5E-10191260IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
VPQGVESELG PKSLNPTPAL APKTTKNNVA IFWDLDNKPP SSFSPYDAAV KLKRASSSFG  60
VVRHMVAYAN PQTFSYVPQV VREQRKDRRL LNQLENNGVI KPVEPYLCRI CGRRFYTNEK  120
FINHFKQIHE REHQKRMNQI ESARGKRRVQ LVAKYSMKME KYKNVSRDIL TPKVGYCLGD  180
ELKRAGFWIR TVSAKPQAAD VALRDHMADV MDKRRADCLV LVSDDSDFVG VLKEAKLRCV  240
KTVVVGDVND GALKRIADTA FSWREILMGK AQKEAVSVVG RWKDRDVLKR LEWKYNPEVE  300
KKVHCLDNEF DDDNEDQNLS GIFNGANADH GQTED
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_29.96
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021901732.10.0uncharacterized protein LOC110817489
RefseqXP_021901733.10.0uncharacterized protein LOC110817489
TrEMBLA0A061G4Y51e-179A0A061G4Y5_THECC; Zinc finger family protein
STRINGEOY244731e-179(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM114442833
Representative plantOGRP30481420
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12240.11e-148C2H2 family protein