PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_29.118
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family NAC
Protein Properties Length: 308aa    MW: 36010.4 Da    PI: 7.4753
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_29.118genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM182.21.2e-5671361129
                           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknrat 78 
                                   +ppGfrFhPtdeelv++yL+kkv++k+++l +vik+vd+yk+ePwdL++  ++ + e++ewyfFs++dkky+tg+r+nrat
  evm.model.supercontig_29.118   7 VPPGFRFHPTDEELVDYYLRKKVASKRIDL-DVIKDVDLYKIEPWDLQElcRIGNeEQNEWYFFSHKDKKYPTGTRTNRAT 86 
                                   69****************************.9***************954544442556********************** PP

                           NAM  79 ksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                                   k+g+Wkatg+dk++++ +++l+g++ktLvfykgrap+g+k+dW+mheyrle
  evm.model.supercontig_29.118  87 KAGFWKATGRDKAIYT-RHSLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 136
                                   ****************.889*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-615156IPR003441NAC domain
PROSITE profilePS5100560.1797156IPR003441NAC domain
PfamPF023654.2E-298135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048759Biological Processxylem vessel member cell differentiation
GO:1901348Biological Processpositive regulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MNSFSHVPPG FRFHPTDEEL VDYYLRKKVA SKRIDLDVIK DVDLYKIEPW DLQELCRIGN  60
EEQNEWYFFS HKDKKYPTGT RTNRATKAGF WKATGRDKAI YTRHSLIGMR KTLVFYKGRA  120
PNGQKSDWIM HEYRLETNEN GTPQEEGWVV CRVFKKRMTA VRKMGDYDPP CWYDDQLSAT  180
FIPDLDSPRR LPPFNHHHHF PCKQEHYTEP SFLQLPHLDS PTPPSATSYS PTLYQQSILA  240
NNNSQQAMDW RVLDKFVASQ LSHEDASNTF QHMNMLLHDS KRTSDNIGDH QEYASTSTSS  300
CHIDMWK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-51716017169NO APICAL MERISTEM PROTEIN
1ut4_B6e-51716017169NO APICAL MERISTEM PROTEIN
1ut7_A6e-51716017169NO APICAL MERISTEM PROTEIN
1ut7_B6e-51716017169NO APICAL MERISTEM PROTEIN
3swm_A6e-51716020172NAC domain-containing protein 19
3swm_B6e-51716020172NAC domain-containing protein 19
3swm_C6e-51716020172NAC domain-containing protein 19
3swm_D6e-51716020172NAC domain-containing protein 19
3swp_A6e-51716020172NAC domain-containing protein 19
3swp_B6e-51716020172NAC domain-containing protein 19
3swp_C6e-51716020172NAC domain-containing protein 19
3swp_D6e-51716020172NAC domain-containing protein 19
4dul_A6e-51716017169NAC domain-containing protein 19
4dul_B6e-51716017169NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00136DAPTransfer from AT1G12260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_29.118
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021901842.10.0NAC domain-containing protein 7-like isoform X1
SwissprotQ9FWX21e-137NAC7_ARATH; NAC domain-containing protein 7
TrEMBLA0A061GBJ71e-166A0A061GBJ7_THECC; NAC domain protein, IPR003441 isoform 1
STRINGevm.model.supercontig_29.1180.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21112678
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.11e-136NAC 007
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]