PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_289.6

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

bHLH

Protein Properties

Length: 294aa MW: 32693 Da PI: 6.1817

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_289.6	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	48.8	1.3e-15	55	104	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h+ E+rRR++iN++f+ Lr+l+P++ ++K + a+ L +++eY+++Lq evm.model.supercontig_289.6 55 RSKHSVTEQRRRSKINERFQILRDLIPHS----DQKKDTASFLLEVIEYVHYLQ 104 889***********************9....899999************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.75E-18	51	124	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.9E-22	52	125	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.72	53	103	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.37E-14	55	108	No hit	No description
Pfam	PF00010	4.7E-13	55	104	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.1E-12	59	109	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MRTEKGNPEE DEYEDEEFGS KKEGPSSNAP ATAVNNNNNN KNKDGKNNDR ANAMRSKHSV 60 TEQRRRSKIN ERFQILRDLI PHSDQKKDTA SFLLEVIEYV HYLQEKLQKY EGSYQGWSPE 120 PTKLVPWRNS HWRVQNLVNH PQSIKNGSGP GSTYTGKFEE NNITIAPSML TGSQNPLEPD 180 ANRDVACKVM DRQPELASDC VPAHPLQRPV SDAQTSECVS SDSLSQEELN IEGGTINISS 240 VYSQGVDLSQ ANISVQIDLG RRANRGMTSG TVSAKHATIE QLGVVRDEMR KAN*

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00219	DAP	Transfer from AT1G69010	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_289.6

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by heat treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021912295.1	1e-159	transcription factor BIM2 isoform X2
Refseq	XP_021912296.1	1e-159	transcription factor BIM2 isoform X2
Swissprot	Q9CAA4	1e-106	BIM2_ARATH; Transcription factor BIM2
TrEMBL	A0A061E9E2	1e-125	A0A061E9E2_THECC; BES1-interacting Myc-like protein 2
STRING	evm.model.supercontig_289.6	0.0	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5987	27	45
Representative plant	OGRP1360	17	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69010.1	1e-94	BES1-interacting Myc-like protein 2

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_289.6

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]