PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_28.162
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family HSF
Protein Properties Length: 480aa    MW: 54143.8 Da    PI: 6.2456
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_28.162genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.98.7e-351572482102
                                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEE CS
                  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFk 82 
                                   Flkk++e++ed+e++ ++sws n +sf+v+d+++f++++LpkyFkh+nf+SF+RQLn+YgF+k+++++         weF 
  evm.model.supercontig_28.162 157 FLKKTFEMVEDPETDPIVSWSVNRDSFIVWDSHSFSENLLPKYFKHKNFSSFIRQLNTYGFRKIDSDR---------WEFV 228
                                   9********************999*****************************************999.........**** PP

                                   ESXXXXXXXXXXXXXXXXXX CS
                  HSF_DNA-bind  83 hksFkkgkkellekikrkks 102
                                   ++ F+ gkk+ll++ikr+++
  evm.model.supercontig_28.162 229 NEGFQGGKKHLLKNIKRRSR 248
                                   *****************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004157.5E-55153246IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467856.39E-32153246IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.109.2E-37153246IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004476.4E-31157246IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-18157180IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-18195207IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340196220IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-18208220IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MGAQDICANG GRGESSSSPL FSSTEYYLLK PVQEPNKVHT QLENKEEKSL ESVTIKESHT  60
PPQPPPLVNS RYNCGRNVRA DGGSGGCGVG SCCLCSHLIK GLDKDKSEVV LKIKEEELEV  120
EAVDCDHNNG NGSSSLSSSD ALPKPIEGLH DLGPPPFLKK TFEMVEDPET DPIVSWSVNR  180
DSFIVWDSHS FSENLLPKYF KHKNFSSFIR QLNTYGFRKI DSDRWEFVNE GFQGGKKHLL  240
KNIKRRSRYN KQQQGGVNIP SPATLGLEAE LESLKEEQNT LRVEILKLRQ REEESKHQFN  300
SVQERMHCAE CRQQHMFNFF VKVAKDPKFV QRLSQKRRQQ RELDRAEYRK KCRLLETQDT  360
KSLPEVMDAG ISISCRNQNS KTHNQRQLFM ADQLGTHTQT HEGNMMFGAT ISDTASTYHD  420
ISENLMLDSS IVENVVAEDL PVSDSKFYVE LDDLLEKPRN SGGYVGELVE EIGCIGITP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B6e-2215524627129Heat shock factor protein 1
5d5v_B6e-2215524627129Heat shock factor protein 1
5d5v_D6e-2215524627129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1239245LKNIKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_28.162
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021902027.10.0heat shock factor protein HSF30-like
TrEMBLA0A061GLI81e-143A0A061GLI8_THECC; Heat shock transcription factor A2, putative
STRINGevm.model.supercontig_28.1620.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM74981940
Representative plantOGRP1180756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54070.12e-87heat shock transcription factor A9