PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_2758.2
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family M-type_MADS
Protein Properties Length: 381aa    MW: 41852.9 Da    PI: 4.1594
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_2758.2genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF42.68e-14244446
                                  -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
                        SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46
                                  en+   qv fsk r  ++KKA+EL++LC  +v +i+fs+ ++ 
  evm.model.supercontig_2758.2  2 ENEASLQVIFSKHRSSLFKKASELCTLCRPDVGLIVFSPGNRA 44
                                  788889********************************98875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.0E-10150IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.624151IPR002100Transcription factor, MADS-box
PfamPF003197.3E-17247IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-16265IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-61328IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-62849IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MENEASLQVI FSKHRSSLFK KASELCTLCR PDVGLIVFSP GNRAFCYGNP NIDIVIDRFL  60
SIDVHPTRDP DNDNDTQQTI SRITEAQDKE EAARKRGKEL KQRRKGLMKE LWYTRSMDKF  120
NLEELEVLDV GMKALWNDVA ELAKKLKKEQ GNSSSAEGSP RDDGMFYSDP AMKTLTTLPM  180
PSMPSNPTHE YAPSSTNSTP PLSSFCNLDS GNPNIMMMDN PLNDSSMALD PVDDLMAMPR  240
DLFNNLVMIE SDDPIAALNA GDNPDIMSDA FGNQIATMDI NLSNDPNIGP NEFFNPSTMP  300
HAPNDPISTT SNPLNMIRIV PDDSNLNSVF DGFTLEMLFA DPLDDENFIV DNPNEAANGD  360
NPKTMPPPLA GNVLGSGQGI *
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_2758.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2385900.0AC238590.1 Carica papaya BAC clone 12I03, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021887443.10.0agamous-like MADS-box protein AGL62
STRINGevm.model.supercontig_2758.20.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.16e-25AGAMOUS-like 62