PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_273.4
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family C3H
Protein Properties Length: 330aa    MW: 37582.4 Da    PI: 6.8272
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_273.4genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.22.5e-12190215126
                                  --S---SGGGGTS--TTTTT-SS-SS CS
                      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                                  y   +C+++ +tG+C yGd+CkF+H+
  evm.model.supercontig_273.4 190 YQPDICKDYKETGYCGYGDSCKFMHD 215
                                  67789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.96E-9188220IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878189217IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7189216IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-10190215IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-12190220IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.102.2E-13253315IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578504.35E-13267311No hitNo description
PfamPF139202.3E-8267308No hitNo description
CDDcd001621.12E-7268309No hitNo description
PROSITE profilePS5008910.542268306IPR001841Zinc finger, RING-type
SMARTSM001849.3E-5268305IPR001841Zinc finger, RING-type
PROSITE patternPS005180283292IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MDSGEPQQSE QQEPKPSDQV CNFFRKPSKN KNIRKRTVDE DDDEDSKSES SLLHSQKKAP  60
KHDSKLYFST GPSKSSSSTD PEINKPIFQF ESSKEIQVQH DSKATATLET ETEFTKDSRA  120
IRERVLKRAE ESLKGKNKSS EEKLYTGIHG YTDHKAGFRR EQTISSEKAG GAHGPLRASA  180
HIRVSARFDY QPDICKDYKE TGYCGYGDSC KFMHDRGDYK SGWQLEKEWD EAEKARKRNL  240
AFGGDDGNEE GAEQSDEDDD DDSLPFACFI CRQPFVDPVV TKCNHYFCEH CALKHHAKNK  300
KCFVCNKPTL GIFNTAHEIR KRMAEERNR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M3e-6483271321RING finger protein 113A
5z58_M3e-6483271321RING finger protein 113A
6ff4_t3e-6483271321RING finger protein 113A
6ff7_t3e-6483271321RING finger protein 113A
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_273.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021912444.10.0zinc finger CCCH domain-containing protein 1
SwissprotQ8GX841e-179C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLW9RK450.0W9RK45_9ROSA; Zinc finger CCCH domain-containing protein 1
STRINGevm.model.supercontig_273.40.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM110992634
Representative plantOGRP58961720
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-152C3H family protein