 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
evm.model.supercontig_27.81 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
|
| Family |
NAC |
| Protein Properties |
Length: 386aa MW: 43086.7 Da PI: 7.9302 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| evm.model.supercontig_27.81 | genome | ASGPB | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 172.4 | 1.3e-53 | 15 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgy 82
lppGfrFhPtdeelvv+yLkkk+++ +l++ ++i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgy
evm.model.supercontig_27.81 15 LPPGFRFHPTDEELVVHYLKKKAASAPLPV-TIIAEVDLYKFDPWELPSKATFGEQEWYFFSPRDRKYPNGARPNRAATSGY 95
79****************************.89***************8888999*************************** PP
NAM 83 Wkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
Wkatg+dk++l+ ++++vg+kk Lvfy g+ pkg kt+W+mheyrl
evm.model.supercontig_27.81 96 WKATGTDKPILTCkGNQKVGVKKALVFYGGKPPKGIKTNWIMHEYRL 142
**********98657888***************************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 386 aa
Download sequence Send
to blast |
MESTDSSSGS QHPQLPPGFR FHPTDEELVV HYLKKKAASA PLPVTIIAEV DLYKFDPWEL 60
PSKATFGEQE WYFFSPRDRK YPNGARPNRA ATSGYWKATG TDKPILTCKG NQKVGVKKAL 120
VFYGGKPPKG IKTNWIMHEY RLVDGNPVGS KSHPSDSPNK KSSLRLDDWV LCRIYKKNNS 180
SQGTLMEREM KEESMEGMVE TVPIITTYSH QNLKTKNTSC YGSLMVENDE NFFHGILSSS 240
SSGDHHYHHH HHHHQQLASS TSKPADNSIS IPSVSNTNTT TIKRPLQPPP HQNYWNHHQY 300
QAGSIGSSSS SKRFHGDLNI NGGGSTGNDH DHDHDHDHDD NNSSFISLLN QLPQSSMVHP 360
NSIIGSLGDG VLRQQFQLPS MNWNS*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 9e-76 | 15 | 182 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 9e-76 | 15 | 182 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 9e-76 | 15 | 182 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 9e-76 | 15 | 182 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 8e-76 | 15 | 182 | 20 | 173 | NAC domain-containing protein 19 |
| 3swm_B | 8e-76 | 15 | 182 | 20 | 173 | NAC domain-containing protein 19 |
| 3swm_C | 8e-76 | 15 | 182 | 20 | 173 | NAC domain-containing protein 19 |
| 3swm_D | 8e-76 | 15 | 182 | 20 | 173 | NAC domain-containing protein 19 |
| 3swp_A | 8e-76 | 15 | 182 | 20 | 173 | NAC domain-containing protein 19 |
| 3swp_B | 8e-76 | 15 | 182 | 20 | 173 | NAC domain-containing protein 19 |
| 3swp_C | 8e-76 | 15 | 182 | 20 | 173 | NAC domain-containing protein 19 |
| 3swp_D | 8e-76 | 15 | 182 | 20 | 173 | NAC domain-containing protein 19 |
| 4dul_A | 9e-76 | 15 | 182 | 17 | 170 | NAC domain-containing protein 19 |
| 4dul_B | 9e-76 | 15 | 182 | 17 | 170 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}. |
