PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

HSF

Protein Properties

Length: 236aa MW: 27242.7 Da PI: 8.2049

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_27.46	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	99.6	2.9e-31	43	157	2	103
HHHHHHHHHCTG......................GGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTT CS HSF_DNA-bind 2 Flkklyeilede......................elkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYg 61 Fl k+ye+le++ e ++l+sw+++gn fvv+++ ef++ +LpkyFkh+nf+SF+RQLn+Yg evm.model.supercontig_27.46 43 FLLKTYELLEEAddghdhqqvmwcgsdqnfngdyEKNRLVSWNAEGNGFVVWNPAEFSDLLLPKYFKHNNFSSFIRQLNTYG 124 999999999955566666777777777777777799******************************************** PP EEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 62 FkkvkdeekkskskekiweFkhksFkkgkkellekikrkkse 103 Fkk+++++ weFk+++F+kg k++l +i rkk+e evm.model.supercontig_27.46 125 FKKTSSDR---------WEFKNEKFRKGCKHMLMEITRKKHE 157 *999.........********************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	1.0E-33	33	149	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	8.1E-38	39	154	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	9.0E-27	43	154	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.0E-11	65	88	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	2.45E-25	76	154	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	1.0E-11	103	115	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.0E-11	116	128	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MMIGRKFMED GNYDYNLGKI SCCSSSSSSI ASSSPKTKGP APFLLKTYEL LEEADDGHDH 60 QQVMWCGSDQ NFNGDYEKNR LVSWNAEGNG FVVWNPAEFS DLLLPKYFKH NNFSSFIRQL 120 NTYGFKKTSS DRWEFKNEKF RKGCKHMLME ITRKKHEPSV FPTYLRASPR EENSNNNNNG 180 DENNGLTLMM EENKSLKREK LELQMRIAQV KSLEIKLLDC LAQHVETQQN KEKKV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1hks_A	2e-15	75	154	17	106	HEAT-SHOCK TRANSCRIPTION FACTOR
1hkt_A	2e-15	75	154	17	106	HEAT-SHOCK TRANSCRIPTION FACTOR
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_27.46

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021902177.1	1e-177	heat stress transcription factor B-2a-like
TrEMBL	A0A314ZQ47	4e-81	A0A314ZQ47_PRUYE; Heat stress transcription factor B-2a
STRING	evm.model.supercontig_27.46	1e-176	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16597	7	12
Representative plant	OGRP96	17	233

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62020.1	7e-36	heat shock transcription factor B2A

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_27.46