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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_27.35 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | bHLH | ||||||||
Protein Properties | Length: 185aa MW: 20603.2 Da PI: 8.992 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.3 | 2.4e-12 | 10 | 61 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+ + +Er+RR++++ +++L +llP+ ++ + s + L++A+ YIk+Lq evm.model.supercontig_27.35 10 RTDRKTIERNRRNQMKVLYSKLNSLLPQE--TSRDRTSLPDQLQEATSYIKKLQ 61 778899**********************6..49999*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 5.93E-7 | 6 | 65 | No hit | No description |
SuperFamily | SSF47459 | 5.89E-14 | 6 | 85 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 12.074 | 8 | 60 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.6E-8 | 10 | 61 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.6E-13 | 10 | 77 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.2E-4 | 14 | 66 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MESNPSSSSR TDRKTIERNR RNQMKVLYSK LNSLLPQETS RDRTSLPDQL QEATSYIKKL 60 QVNVERMKEK KDRLMVGMER LGSAGSSSGN GSNRIDVHVT GSILQVVLVT GLDSQSMFNE 120 ILRLIHEEGA EIVNASFSVV DDNTVLHTIH AQVDQSELGH GHHKAARISE RLKKFVHDAD 180 HGAF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_27.35 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021902337.1 | 1e-133 | transcription factor bHLH162 | ||||
Swissprot | F4JIJ7 | 2e-41 | BH162_ARATH; Transcription factor bHLH162 | ||||
TrEMBL | A5C0F4 | 2e-72 | A5C0F4_VITVI; Uncharacterized protein | ||||
STRING | evm.model.supercontig_27.35 | 1e-132 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1278 | 25 | 92 |
Representative plant | OGRP1345 | 11 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20970.1 | 8e-43 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_27.35 |
Publications ? help Back to Top | |||
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