 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
evm.model.supercontig_27.230 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
|
| Family |
Trihelix |
| Protein Properties |
Length: 412aa MW: 46691.9 Da PI: 7.8569 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| evm.model.supercontig_27.230 | genome | ASGPB | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 88.7 | 6.3e-28 | 298 | 384 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcp 80
rW++ ev+aLi +r+ me+++r+ g +k W+e+s+ m g++rs+k+Ckekwen+nk+++k + kk+++e+s+ cp
evm.model.supercontig_27.230 298 RWPDAEVQALIMLRTAMEHKFRTtGVSKCSIWDEISAGMTNMGYTRSAKKCKEKWENINKYFRKSIGNGKKHHPEKSKACP 378
8*********************7478999**************************************************** PP
trihelix 81 yfdqle 86
yf++l+
evm.model.supercontig_27.230 379 YFQELD 384
****97 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 412 aa
Download sequence Send
to blast |
MELLTADRQL REIDGFPQHV DPFPQTNGCD LVYDQHQPTA VIHPLEDHIA SLVATNPSPP 60
QKLRPIRFSG RMEDPPPPFP DDSAALAGTL DRLPDLGFGG GNVVQCFHGQ VKPLVGDMAD 120
AGGGGSDAVD LERVGSETSE ENRGGSVNSL GNMSVSKFDN RGHLQKVIKK RHQKLKEPVN 180
RKRKRETRKK LEVFLEQLVE KVMERQEQMH KQLIETMERR ENERIMREEA WRQKEIERMR 240
RDEEARAQET ARSLALISFI QSTVGHEIEI PQQPLSTIFC TEDNGIQKEI KCDPSNRRWP 300
DAEVQALIML RTAMEHKFRT TGVSKCSIWD EISAGMTNMG YTRSAKKCKE KWENINKYFR 360
KSIGNGKKHH PEKSKACPYF QELDILYKNG LLSPGNSLVS GGNESETKRE N*
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 168 | 184 | KKRHQKLKEPVNRKRKR |
| 2 | 231 | 240 | RQKEIERMRR |
