PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_27.185
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family G2-like
Protein Properties Length: 343aa    MW: 37565 Da    PI: 7.1514
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_27.185genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like107.76.1e-341973155
                       G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                                  k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl
  evm.model.supercontig_27.185 19 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 73
                                  79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.4851676IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.5E-321874IPR009057Homeodomain-like
SuperFamilySSF466898.96E-181873IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-251974IPR006447Myb domain, plants
PfamPF002491.4E-92172IPR001005SANT/Myb domain
PfamPF143793.3E-9105126IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
PfamPF143792.8E-8162186IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MDPINGGNNL NNNANLASKQ RLRWTHELHE RFVDAVAQLG GPDRATPKGV LRVMGVQGLT  60
IYHVKSHLQK YRLAKYLPDS SSDGKKTDKK ETGDMLSNLD GSSGMQITEA LKLQMEVQKR  120
LHEQLEACFI SAIFHRQLLK IKQYEFAGIY CSFGGHYSGR QVQRQLQLRI EAQGKYLKKI  180
IEEQQRLSGV LAEAPGSGVS APVSGDNCLD SDTKNDPGTP GPTSESPVQE KAGKDRAPDK  240
SLSVEESFSS HHEPLTPDSG CHGGSPADSP EGERSSKRQR VGMGASYSKQ ELVLTHQILE  300
SSLSSSYQQP HTVFLTREGF DPLSALPIRN EDQLEKVSGS DL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A1e-231976158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-231976158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-231976158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-231976158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00252DAPTransfer from AT2G01060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_27.185
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021902128.10.0myb family transcription factor PHL7 isoform X2
SwissprotQ9SJW01e-132PHL7_ARATH; Myb family transcription factor PHL7
TrEMBLA5C9661e-179A5C966_VITVI; Uncharacterized protein
STRINGevm.model.supercontig_27.1850.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87532536
Representative plantOGRP7817262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.11e-119G2-like family protein