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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_27.18 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | ERF | ||||||||
Protein Properties | Length: 162aa MW: 17662.8 Da PI: 10.1017 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.3 | 2.6e-20 | 8 | 58 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr ++ +gr++AeIrd ++ ++r++lg+f+t+eeAa a++ a+++l+g+ evm.model.supercontig_27.18 8 HYRGVRKRP-WGRYAAEIRDpWK----KTRVWLGTFDTPEEAALAYDGAARSLRGA 58 69*******.**********883....5*************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 4.2E-36 | 8 | 71 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.721 | 8 | 65 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.6E-13 | 8 | 57 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.1E-32 | 8 | 65 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.95E-30 | 8 | 65 | No hit | No description |
SuperFamily | SSF54171 | 1.96E-22 | 8 | 66 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 4.5E-11 | 9 | 20 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.5E-11 | 31 | 47 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 162 aa Download sequence Send to blast |
MASSREGHYR GVRKRPWGRY AAEIRDPWKK TRVWLGTFDT PEEAALAYDG AARSLRGAKA 60 KTNFPPPVNG LSLDLNLPSD HHQRWGPPSA SHHHLHHHRL ALGDFLQTGV LNSCGSDTSS 120 SKGTNVSVQL QEGTSSSAAS YLGVVRRGLP IDLNEPPPLW L* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 7e-23 | 8 | 69 | 5 | 67 | ATERF1 |
3gcc_A | 7e-23 | 8 | 69 | 5 | 67 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00645 | PBM | Transfer from LOC_Os05g41760 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_27.18 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021902277.1 | 1e-115 | ethylene-responsive transcription factor 12 | ||||
Swissprot | Q94ID6 | 6e-55 | ERF81_ARATH; Ethylene-responsive transcription factor 12 | ||||
TrEMBL | A0A1L6CAZ0 | 7e-72 | A0A1L6CAZ0_9ROSI; AP2/ERF domain-containing transcription factor | ||||
TrEMBL | A0A1L6CB72 | 7e-72 | A0A1L6CB72_VERFO; AP2/ERF domain-containing transcription factor | ||||
STRING | evm.model.supercontig_27.18 | 1e-115 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28360.1 | 3e-53 | ERF domain protein 12 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_27.18 |