PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_27.162
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family bHLH
Protein Properties Length: 460aa    MW: 50384 Da    PI: 6.5075
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_27.162genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.81.3e-053483851254
                                   HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                           HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                   R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  evm.model.supercontig_27.162 348 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 385
                                   677888999*******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.973336385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.73E-6346390No hitNo description
SuperFamilySSF474591.96E-11346400IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.9E-9350393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042631Biological Processcellular response to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071472Biological Processcellular response to salt stress
GO:2000214Biological Processregulation of proline metabolic process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MGEEFHAGVC GETWWNSSKN VFASPCSVGI GGDLMGGSTN FFWSSFDVLD MKAKSSYEEE  60
DVANITTAVT DTSTNTKNSS SVSADGVFHV QKLQEAAADS DSTLQMMGFG ISSSSPSTSD  120
WNQSILGRLS SSESNYSSMM PEDMNSISRL QQSYSESSIN ENIFKPVYLH QDFSSSSSSS  180
SSASYGFPNS TLLQTLFESA PTHDDPPPPP PPHHHHHHQL LNNRSMNYMS TYTNCNSQDQ  240
LSPSNWSKTV SPLLKPSLPK QQFWNSSSSS FPAPLNDIIR PRLSPSSQSQ FLVPCFQEKS  300
NCSKLTPKLS TGEIRDSGSA MKKASSELPV SKRPRIETPS PLPTFKVRKE KLGDRITALQ  360
QLVSPFGKTD TASVLHEAIE YIKFLHDQVS VLSNPYMKQG APTQLHQQGC HEKLKEAEGS  420
IKQDLRSRGL CLVPISSTFP VANETTADFW TPTFGGTFR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_27.162
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021902088.10.0transcription factor bHLH112 isoform X1
TrEMBLA0A2K2AP181e-139A0A2K2AP18_POPTR; Uncharacterized protein
TrEMBLA0A3N7ERD21e-138A0A3N7ERD2_POPTR; Uncharacterized protein
STRINGevm.model.supercontig_27.1620.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM80622636
Representative plantOGRP31351129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.13e-60bHLH family protein